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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_020679791.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 300aa MW: 34187.5 Da PI: 4.7182 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 60.7 | 2.3e-19 | 79 | 132 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++ eq++ Le+ Fe +++++ e++ +LAk+lgL+ rqV +WFqNrRa++k
XP_020679791.1 79 KKRRLAVEQVKFLEKIFELDNKLDPERKIQLAKELGLQPRQVAIWFQNRRARWK 132
5567899**********************************************9 PP
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| 2 | HD-ZIP_I/II | 127.1 | 7.4e-41 | 78 | 168 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekkrrl+ eqvk+LE+ Fe ++kL+perK +la+eLglqprqva+WFqnrRAR+ktkqlEkdyeaLk++y++lk++ e+L ke+e+L++e
XP_020679791.1 78 EKKRRLAVEQVKFLEKIFELDNKLDPERKIQLAKELGLQPRQVAIWFQNRRARWKTKQLEKDYEALKANYNSLKADYESLLKEKEKLQSEA 168
69*************************************************************************************9875 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 300 aa Download sequence |
MSGRRIHGGS NVAVLLQKEG VSPETIEALL GTSSGGFQGA MVNFEDVCTN AANQAYYRQL 60 DMEQVGDEEL EEYLHQPEKK RRLAVEQVKF LEKIFELDNK LDPERKIQLA KELGLQPRQV 120 AIWFQNRRAR WKTKQLEKDY EALKANYNSL KADYESLLKE KEKLQSEATH LTNKLLLKES 180 MKDSMKLQEW APPLPKPEID LAFKTANCDI SPMLRLKQED LSSVNSVVID SESPHCAEQV 240 GRSTLLEPAV SSNVLEPDQS DISHTGEDEE VKDCHFLKLE DSSNDYGFPA DDHAFLFWPY |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 127 | 135 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G01470.1 | 7e-44 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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