PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020679790.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HD-ZIP
Protein Properties Length: 302aa    MW: 34345.7 Da    PI: 4.7182
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020679790.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.4e-1981134356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++  eq++ Le+ Fe +++++ e++ +LAk+lgL+ rqV +WFqNrRa++k
  XP_020679790.1  81 KKRRLAVEQVKFLEKIFELDNKLDPERKIQLAKELGLQPRQVAIWFQNRRARWK 134
                     5567899**********************************************9 PP
2HD-ZIP_I/II127.17.5e-4180170191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     ekkrrl+ eqvk+LE+ Fe ++kL+perK +la+eLglqprqva+WFqnrRAR+ktkqlEkdyeaLk++y++lk++ e+L ke+e+L++e 
  XP_020679790.1  80 EKKRRLAVEQVKFLEKIFELDNKLDPERKIQLAKELGLQPRQVAIWFQNRRARWKTKQLEKDYEALKANYNSLKADYESLLKEKEKLQSEA 170
                     69*************************************************************************************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MSGRRIHGGS NVAVLLQKEG VSPETIEALL GTSSGGFQAS GAMVNFEDVC TNAANQAYYR  60
QLDMEQVGDE ELEEYLHQPE KKRRLAVEQV KFLEKIFELD NKLDPERKIQ LAKELGLQPR  120
QVAIWFQNRR ARWKTKQLEK DYEALKANYN SLKADYESLL KEKEKLQSEA THLTNKLLLK  180
ESMKDSMKLQ EWAPPLPKPE IDLAFKTANC DISPMLRLKQ EDLSSVNSVV IDSESPHCAE  240
QVGRSTLLEP AVSSNVLEPD QSDISHTGED EEVKDCHFLK LEDSSNDYGF PADDHAFLFW  300
PY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-44HD-ZIP family protein