PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020679750.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 649aa MW: 70884.1 Da PI: 7.4848

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020679750.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.3	1.1e-15	24	68	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ XP_020679750.1 24 REKWTEEEHNRFLEALKLYGRA-WQSIEEHIG-TKTAIQIRSHAQKF 68 789***************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence
MEMNSFGEDL AVKTRKPYTI TKQREKWTEE EHNRFLEALK LYGRAWQSIE EHIGTKTAIQ 60 IRSHAQKFFT KLEKEAVATG TPLGQARDID IPPPRPKKKP NYPYPRKTGS SSISATTEAA 120 NKKTLKTSNP LSQEINKQEA SLAAKSVQET EECSDETHCS VVLNLFQDAP SASIPSRDKG 180 SKKKFSFSQY VPMATEPKEP PSLKGSSLTI EVNLESSLNE VTKSDKAPGR TSGINIELHE 240 LSAGSGAHKQ AEKQSESDHK QGVQYHEGQE AKGIQTTCIE NGGSPSCAFM NHTIPAVPAP 300 AFVTSSAMSF ISHPFPTFPP FAQDFYRSFL GFSSAFSSQI ISTLQQNPTV HAAACTAAAS 360 LCPSEEVDSS SMAAIAAATV AAASAWWTTN GPFLFFPPIH ASGFACSPPA ISFPVVNTAQ 420 APQEKMKEKQ EECQNSASAN QQAVLSSSSS SQLEEGEQKF SNNFKASSDV DVACRNLDRA 480 KVSKPERSSC GSNTTSSSEI ETDAVLKKNG ETKDEEGNQA HFQNLAAGEV NNRRARSSLC 540 FNETWKEVSQ EGRLAFEALF TRDILPQSFA TQLHKSEMGM PKENIPIRRE ETCNQNCCLP 600 NEIKQGNLKV GRTGFKPYKR CSAEVEVHKS SANDETSNKR IRLQGKVSS

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence

MEMNSFGEDL AVKTRKPYTI TKQREKWTEE EHNRFLEALK LYGRAWQSIE EHIGTKTAIQ  60
IRSHAQKFFT KLEKEAVATG TPLGQARDID IPPPRPKKKP NYPYPRKTGS SSISATTEAA  120
NKKTLKTSNP LSQEINKQEA SLAAKSVQET EECSDETHCS VVLNLFQDAP SASIPSRDKG  180
SKKKFSFSQY VPMATEPKEP PSLKGSSLTI EVNLESSLNE VTKSDKAPGR TSGINIELHE  240
LSAGSGAHKQ AEKQSESDHK QGVQYHEGQE AKGIQTTCIE NGGSPSCAFM NHTIPAVPAP  300
AFVTSSAMSF ISHPFPTFPP FAQDFYRSFL GFSSAFSSQI ISTLQQNPTV HAAACTAAAS  360
LCPSEEVDSS SMAAIAAATV AAASAWWTTN GPFLFFPPIH ASGFACSPPA ISFPVVNTAQ  420
APQEKMKEKQ EECQNSASAN QQAVLSSSSS SQLEEGEQKF SNNFKASSDV DVACRNLDRA  480
KVSKPERSSC GSNTTSSSEI ETDAVLKKNG ETKDEEGNQA HFQNLAAGEV NNRRARSSLC  540
FNETWKEVSQ EGRLAFEALF TRDILPQSFA TQLHKSEMGM PKENIPIRRE ETCNQNCCLP  600
NEIKQGNLKV GRTGFKPYKR CSAEVEVHKS SANDETSNKR IRLQGKVSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46830.1	9e-46	MYB_related family protein