PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020678962.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 273aa MW: 31010.4 Da PI: 4.5242 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.6e-18 | 48 | 101 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++++ e++ ++A lgL+ rqV vWFqNrRa++k XP_020678962.1 48 KKRRLSLEQVRALEKNFEVENKLDPERKVRIALDLGLQPRQVAVWFQNRRARWK 101 4558999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 126.8 | 9.7e-41 | 47 | 139 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls eqv++LE++Fe e+kL+perKv++a +LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal+ + ++L++++e L +e+ke XP_020678962.1 47 EKKRRLSLEQVRALEKNFEVENKLDPERKVRIALDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRTSYDALAIDCDSLRRDKEILLAEVKE 139 69*************************************************************************************999986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence |
MKRPRSSDSV TGGDLYAVKL PTILDGVEED EEEEGLFSGE LPLAAGEKKR RLSLEQVRAL 60 EKNFEVENKL DPERKVRIAL DLGLQPRQVA VWFQNRRARW KTKQLERDYA ALRTSYDALA 120 IDCDSLRRDK EILLAEVKEF KTKLGLTEEE SESKAAPVED PQPQTAMGAA VTYKDGSSDS 180 DSSAVVYDEN SPYHCGAPLL PELHRRPTEP EEPQSLMVGG GAFDFQLSSE WRIQRSFFPK 240 EEHNFLAGEE HSSDFFPEEQ NPVFTWYGSD HWS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 104 | RRARWKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 4e-50 | HD-ZIP family protein |