PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020678961.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 279aa MW: 31647.2 Da PI: 4.5242 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.6e-18 | 54 | 107 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++++ e++ ++A lgL+ rqV vWFqNrRa++k XP_020678961.1 54 KKRRLSLEQVRALEKNFEVENKLDPERKVRIALDLGLQPRQVAVWFQNRRARWK 107 4558999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 126.7 | 1e-40 | 53 | 145 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls eqv++LE++Fe e+kL+perKv++a +LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal+ + ++L++++e L +e+ke XP_020678961.1 53 EKKRRLSLEQVRALEKNFEVENKLDPERKVRIALDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRTSYDALAIDCDSLRRDKEILLAEVKE 145 69*************************************************************************************999986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence |
MKRPRSSDSV TGVGFFVSGD LYAVKLPTIL DGVEEDEEEE GLFSGELPLA AGEKKRRLSL 60 EQVRALEKNF EVENKLDPER KVRIALDLGL QPRQVAVWFQ NRRARWKTKQ LERDYAALRT 120 SYDALAIDCD SLRRDKEILL AEVKEFKTKL GLTEEESESK AAPVEDPQPQ TAMGAAVTYK 180 DGSSDSDSSA VVYDENSPYH CGAPLLPELH RRPTEPEEPQ SLMVGGGAFD FQLSSEWRIQ 240 RSFFPKEEHN FLAGEEHSSD FFPEEQNPVF TWYGSDHWS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 110 | RRARWKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 5e-51 | HD-ZIP family protein |