PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020678552.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family BBR-BPC
Protein Properties Length: 272aa    MW: 30027.2 Da    PI: 10.4962
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020678552.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind245.53.7e-756927293301
       GAGA_bind  93 salpvgvqvlsgtksidslqqlse..pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesade 185
                     ++  ++ + l+ tk+i++lq++    + ++ s+++++ ++ + + pi  ++ +a++++++k+++++  +k+    ++k    ++k ++kk ++ +
  XP_020678552.1  69 FTWVPQRSFLHPTKTINHLQTMPVisETFNMSSMPIQSNSSVPESPIAANPINARKQQSSKNKAKNVATKVL---RPK----AEKGTKKKGGSMS 156
                     333344455556666666665222224444444444444444444444444444433333322222222222...222....2222333333336 PP

       GAGA_bind 186 rskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydls 280
                     + k+ekk++d   ngv +D s++P+P+CsCtG++rqCY+WG+GGWqS+CCtt +S yPLPvs++r+g+R+agrKmS ga++klL++L aeG dls
  XP_020678552.1 157 TGKREKKNQDDMFNGVMIDLSGVPAPICSCTGMPRQCYRWGAGGWQSSCCTTGLSEYPLPVSPTRPGSRMAGRKMSIGAYTKLLQRLVAEGQDLS 251
                     7899******************************************************************************************* PP

       GAGA_bind 281 npvDLkdhWAkHGtnkfvtir 301
                       vDLk+hWA+HGtnkfvti+
  XP_020678552.1 252 YGVDLKNHWARHGTNKFVTIK 272
                     ********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MDGKSKLNLR NWDFTDNRHS ESMFKPGLGV SFPESNSSVY QPGFLKIGAY SDRTTVMDEH  60
RSEASSVSFT WVPQRSFLHP TKTINHLQTM PVISETFNMS SMPIQSNSSV PESPIAANPI  120
NARKQQSSKN KAKNVATKVL RPKAEKGTKK KGGSMSTGKR EKKNQDDMFN GVMIDLSGVP  180
APICSCTGMP RQCYRWGAGG WQSSCCTTGL SEYPLPVSPT RPGSRMAGRK MSIGAYTKLL  240
QRLVAEGQDL SYGVDLKNHW ARHGTNKFVT IK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.33e-57BBR-BPC family protein