PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020677919.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 899aa MW: 100524 Da PI: 4.402

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020677919.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.3	4.2e-06	345	363	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C f+ar G+C G++CkF H XP_020677919.1 345 CVFYAR-GWCIKGNSCKFLH 363 999999.************* PP

Sequence ? help Back to Top
Protein Sequence Length: 899 aa Download sequence
MPEHLEKADP SALADGVDSP MLDQEDFEVE EEEVEMDEEE EEEVSEGEEK EDVEAEEEED 60 DEEEASEVEE EEEVEGGDSE GEEVEELVEY GIDREQEEID EVEEVEGEGE EEGEGNDEQE 120 AEEMEEEGED EGSGEDEIDE EEVLVEDERR GKDDEESAVI SAEAASAAPE DAKARDNAEK 180 HHAYDHSKVP STNIKEFNGT SVSKGSSALV SEHITAEENG NLETLLGETY KGVLLEKEIT 240 NESPKHVKNN SLETQGSLHS LGSDNTRSLQ PLKSDLSIEG GVRNESEIVN YNVSEKGESH 300 LQEKINSQLL EDLTPTCGHT PQRRPRSSSP GSEPERMNKR LANVCVFYAR GWCIKGNSCK 360 FLHQEDGVNK IEQQTKEDTF GNNRTLDSRA STGSEKISER SKVSPALLES NPKGSLGCNS 420 QLQRALVRTY GTGSHMTSQL ADNYDMHSKG EFQQSDHVQA DYSSNREENK KTYGKMSHFE 480 SIVERQPVDA FLSRRHLIEG KLVNEINEDS PYDMTISGRT RPVDTFLSNA KHYSDSSATS 540 SILHRNSNSP SPYGKTEGNA IRSVQSHFLN QESYNSHSLA DSQNSRLGGS FQFPQLDYRL 600 SRAGTPPNSG STRNTEYLEG HSLLDLDRRY RGSGSISLTR DSSPYNSRSE LRNMIHHNIP 660 SDLTSRQTKK IQYDAWEPSQ PFRSSLAIAS KSISSPSQYD PILDSIEPAT ANARDCFHTS 720 RTTPFQNASF LPTKTENAIS WDGMLAKNAS LHDSSAHTSA DVFFTSTKLE GENNSFPSNE 780 KLWNPDRLLE RSNYKDAELG GEWKNNDKSR NIKESKALKI FHTALVDLVK ELLKPWWREG 840 QLSKDAHKTV VKKSVEKVLS ALQSHQIPST QEAINQYLTT SRQKIFKLVE GYAQKHANS

Sequence ? help Back to Top

Protein Sequence Length: 899 aa Download sequence

MPEHLEKADP SALADGVDSP MLDQEDFEVE EEEVEMDEEE EEEVSEGEEK EDVEAEEEED  60
DEEEASEVEE EEEVEGGDSE GEEVEELVEY GIDREQEEID EVEEVEGEGE EEGEGNDEQE  120
AEEMEEEGED EGSGEDEIDE EEVLVEDERR GKDDEESAVI SAEAASAAPE DAKARDNAEK  180
HHAYDHSKVP STNIKEFNGT SVSKGSSALV SEHITAEENG NLETLLGETY KGVLLEKEIT  240
NESPKHVKNN SLETQGSLHS LGSDNTRSLQ PLKSDLSIEG GVRNESEIVN YNVSEKGESH  300
LQEKINSQLL EDLTPTCGHT PQRRPRSSSP GSEPERMNKR LANVCVFYAR GWCIKGNSCK  360
FLHQEDGVNK IEQQTKEDTF GNNRTLDSRA STGSEKISER SKVSPALLES NPKGSLGCNS  420
QLQRALVRTY GTGSHMTSQL ADNYDMHSKG EFQQSDHVQA DYSSNREENK KTYGKMSHFE  480
SIVERQPVDA FLSRRHLIEG KLVNEINEDS PYDMTISGRT RPVDTFLSNA KHYSDSSATS  540
SILHRNSNSP SPYGKTEGNA IRSVQSHFLN QESYNSHSLA DSQNSRLGGS FQFPQLDYRL  600
SRAGTPPNSG STRNTEYLEG HSLLDLDRRY RGSGSISLTR DSSPYNSRSE LRNMIHHNIP  660
SDLTSRQTKK IQYDAWEPSQ PFRSSLAIAS KSISSPSQYD PILDSIEPAT ANARDCFHTS  720
RTTPFQNASF LPTKTENAIS WDGMLAKNAS LHDSSAHTSA DVFFTSTKLE GENNSFPSNE  780
KLWNPDRLLE RSNYKDAELG GEWKNNDKSR NIKESKALKI FHTALVDLVK ELLKPWWREG  840
QLSKDAHKTV VKKSVEKVLS ALQSHQIPST QEAINQYLTT SRQKIFKLVE GYAQKHANS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	4e-23	C3H family protein