PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020677410.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HD-ZIP
Protein Properties Length: 814aa    MW: 88357.7 Da    PI: 6.1555
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020677410.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.2e-20104159156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  XP_020677410.1 104 KKRYHRHTSRQIQEMEALFKECPHPDDKQRLRLSQELGLKPRQVKFWFQNRRTQMK 159
                     688999***********************************************998 PP
2START1571.5e-493095402206
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.................dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                     la +aa++lv++  ++ep+W k   +  g   l +++e++                  ++ e  r++++v+m++ +lv  ++d + +W e ++  
  XP_020677410.1 309 LAMAAAEQLVRMCRVNEPLWLKRGGNAVGGGALEILDEEEHsrlfpwpmdvkqlggggYKLEGTRDTALVIMNSITLVDAFMDAN-KWLELFPsi 402
                     678999******************888888888888776667888899999**********************************.********* PP

                     ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS
           START  78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162
                       ka+t++ i+sg      g l+lm+ae q+l+plvp R+ +f+Ry++q  ++g+w+ivd  vd+ q++  + +++R +++pSg++i++++ng+s
  XP_020677410.1 403 vsKAKTIQIITSGlpgngsGSLHLMYAEIQVLTPLVPtREAYFLRYCQQnVEEGTWTIVDFPVDNLQDVI-QLPLMRYRRRPSGCVIQDMPNGYS 496
                     *************************************************99******************8.9*********************** PP

                     EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +v+wve+++++++ +h+++ ++++sg+ +ga +w++ lqrqce+
  XP_020677410.1 497 RVIWVEQAEVEDKPVHQIFSQFINSGMGFGATRWLSVLQRQCER 540
                     ******************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 814 aa     Download sequence    
MYGDCQVLPS MVGGGGGGGG GNVISPDSLF SSQIRNPNIG GFMAGVVPFS SFPPMVPKEE  60
AARKEEEMES GSGSGHLEGL SCGEEHDDGT PPPLALPTPP PAKKKRYHRH TSRQIQEMEA  120
LFKECPHPDD KQRLRLSQEL GLKPRQVKFW FQNRRTQMKA QQDRSDNVIL RADNESLKNE  180
NYRLQAAIRN VICSNCGGPA VLGEMSFEEH HLRIENARLK DELDRLSCIA GRFGGSRSML  240
PSSPLLLPPS LDLDMAIYSR HFHDLPPPQL PPPAVSCGDM LLASGYVDED SAFTGVLIME  300
GKKPLALELA MAAAEQLVRM CRVNEPLWLK RGGNAVGGGA LEILDEEEHS RLFPWPMDVK  360
QLGGGGYKLE GTRDTALVIM NSITLVDAFM DANKWLELFP SIVSKAKTIQ IITSGLPGNG  420
SGSLHLMYAE IQVLTPLVPT REAYFLRYCQ QNVEEGTWTI VDFPVDNLQD VIQLPLMRYR  480
RRPSGCVIQD MPNGYSRVIW VEQAEVEDKP VHQIFSQFIN SGMGFGATRW LSVLQRQCER  540
LASLMAKSIS DLGVITTPEG RKNIMKLSHR MVKTFCAGIT SSGGQSWTAL SDSPDDTIRV  600
TTRKNTLPGQ PNGVILSAVS TVWLPFSYHQ VFDLLTDEQR RSQMDALSSG NSLHEVAHIA  660
NGSHPRNCVS LLRINAASNS SQNVELLLQE SCTHPSGGSL VVYATIDVDA VQVAMNGDDP  720
SYIPLLPTGF ALFPAEQPAS VSCSDPAATN NSAAIGCLLT IGMQVLASAV PSAKLNLSSV  780
TAVNHHLLSA VHQITNALAG GGGGSSTVLP SLEQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0HD-ZIP family protein