PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020677110.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 601aa MW: 67917.9 Da PI: 7.576

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020677110.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.9	1.3e-06	105	126	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+f++ G Ck+G+ C+ H XP_020677110.1 105 ECKFYLLPGGCKFGNDCRSLHH 126 7*****************9996 PP
2	zf-CCCH	28.6	2.4e-09	140	163	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+f++rtG Ck+ + C+F+H+ XP_020677110.1 140 EKECPFYMRTGGCKFASHCRFHHP 163 689********************9 PP
3	zf-CCCH	28.2	3.3e-09	261	287	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG+Ck+ + C+++H++ XP_020677110.1 261 PGEPECQYFMKTGYCKFKSACRYHHPK 287 5799*********************96 PP
4	zf-CCCH	26.2	1.4e-08	394	419	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++C+ff++tG+Ck+ + C+++H++ XP_020677110.1 394 GKPECQFFMKTGQCKFKSACRYHHPK 419 789*********************96 PP
5	zf-CCCH	25.1	3e-08	537	561	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++Cr+f++tG+Ck + C+++H++ XP_020677110.1 537 EPECRYFMKTGHCKLKSACRYHHPK 561 799********************96 PP
6	zf-CCCH	22.4	2.1e-07	574	597	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + ++C ++ r G+Ck+G+ C+++H XP_020677110.1 574 DKPICTYYGR-GICKFGSACRYSHH 597 6799****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence
MVKLSLGLLS LFKNINLGFG HPHMPMTTST GTMEDKEFTK VEQDNKMGLA GDHREITAVE 60 KDTRIRSDET GSDTFVMDRK FNHPLREGAR GPENITSSEN VGQIECKFYL LPGGCKFGND 120 CRSLHHVRLN FLGLPIRLGE KECPFYMRTG GCKFASHCRF HHPDPTAVIG DSFQDLKNGV 180 PSQHHVLAEQ LCETPMPSEN PSNEQTDFLG PFTPNRGFQE NVHRKGNQTT TSPLHSREMN 240 INDQRQILAN RDTAEEYPQR PGEPECQYFM KTGYCKFKSA CRYHHPKSNV SFLGLPQRSS 300 SQQLRETPLP SENTSKEQTA FLGPSSSYVP DLFTPSHGLK TNAQWNGSQA VTSLLYPQET 360 KIINHQQELA SKDAAYEFSG GEPQQHDEYP QRPGKPECQF FMKTGQCKFK SACRYHHPKS 420 NLSFPSLPLR SASNNYEQNG SSEQLSEIPL SSENALNDQR TVLSPSSSNV QGLFTPEQGL 480 WTTQQWNGDQ MATNPLHPPE IKKNEEKHEL ANTDTAYDLN GGVKSQQLDE YPQRPNEPEC 540 RYFMKTGHCK LKSACRYHHP KSNRSLLTPP LKPDKPICTY YGRGICKFGS ACRYSHHMEH 600 T

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence

MVKLSLGLLS LFKNINLGFG HPHMPMTTST GTMEDKEFTK VEQDNKMGLA GDHREITAVE  60
KDTRIRSDET GSDTFVMDRK FNHPLREGAR GPENITSSEN VGQIECKFYL LPGGCKFGND  120
CRSLHHVRLN FLGLPIRLGE KECPFYMRTG GCKFASHCRF HHPDPTAVIG DSFQDLKNGV  180
PSQHHVLAEQ LCETPMPSEN PSNEQTDFLG PFTPNRGFQE NVHRKGNQTT TSPLHSREMN  240
INDQRQILAN RDTAEEYPQR PGEPECQYFM KTGYCKFKSA CRYHHPKSNV SFLGLPQRSS  300
SQQLRETPLP SENTSKEQTA FLGPSSSYVP DLFTPSHGLK TNAQWNGSQA VTSLLYPQET  360
KIINHQQELA SKDAAYEFSG GEPQQHDEYP QRPGKPECQF FMKTGQCKFK SACRYHHPKS  420
NLSFPSLPLR SASNNYEQNG SSEQLSEIPL SSENALNDQR TVLSPSSSNV QGLFTPEQGL  480
WTTQQWNGDQ MATNPLHPPE IKKNEEKHEL ANTDTAYDLN GGVKSQQLDE YPQRPNEPEC  540
RYFMKTGHCK LKSACRYHHP KSNRSLLTPP LKPDKPICTY YGRGICKFGS ACRYSHHMEH  600
T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	4e-38	C3H family protein