PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020677108.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | C3H | ||||||||
Protein Properties | Length: 742aa MW: 83855.7 Da PI: 7.1952 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.5 | 1.7e-06 | 105 | 126 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+f++ G Ck+G+ C+ H XP_020677108.2 105 ECKFYLLPGGCKFGNDCRSLHH 126 7*****************9996 PP | |||||||
2 | zf-CCCH | 28.3 | 3e-09 | 140 | 163 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+f++rtG Ck+ + C+F+H+ XP_020677108.2 140 EKECPFYMRTGGCKFASHCRFHHP 163 689********************9 PP | |||||||
3 | zf-CCCH | 27.8 | 4.3e-09 | 261 | 287 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG+Ck+ + C+++H++ XP_020677108.2 261 PGEPECQYFMKTGYCKFKSACRYHHPK 287 5799*********************96 PP | |||||||
4 | zf-CCCH | 27 | 7.7e-09 | 394 | 419 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++C++f++tG+Ck+ ++C+++H++ XP_020677108.2 394 GKPECQYFMKTGYCKFKATCRYHHPK 419 789*********************96 PP | |||||||
5 | zf-CCCH | 25.9 | 1.7e-08 | 535 | 560 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++C+ff++tG+Ck+ + C+++H++ XP_020677108.2 535 GKPECQFFMKTGQCKFKSACRYHHPK 560 789*********************96 PP | |||||||
6 | zf-CCCH | 24.8 | 3.8e-08 | 678 | 702 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++Cr+f++tG+Ck + C+++H++ XP_020677108.2 678 EPECRYFMKTGHCKLKSACRYHHPK 702 799********************96 PP | |||||||
7 | zf-CCCH | 22.1 | 2.7e-07 | 715 | 738 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + ++C ++ r G+Ck+G+ C+++H XP_020677108.2 715 DKPICTYYGR-GICKFGSACRYSHH 738 6799******.*************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 742 aa Download sequence |
MVKLSLGLLS LFKNINLGFG HPHMPMTTST GTMEDKEFTK VEQDNKMGLA GDHREITAVE 60 KDTRIRSDET GSDTFVMDRK FNHPLREGAR GPENITSSEN VGQIECKFYL LPGGCKFGND 120 CRSLHHVRLN FLGLPIRLGE KECPFYMRTG GCKFASHCRF HHPDPTAVIG DSFQDLKNGV 180 PSQHHVLAEQ LCETPMPSEN PSNEQTDFLG PFTPNRGFQE NVHRKGNQTT TSPLHSREMN 240 INDQRQILAN RDTAEEYPQR PGEPECQYFM KTGYCKFKSA CRYHHPKSNV SFLGLPQRSS 300 SQQLRETPLP SENTSKEQTA FLGPSSSYVP DLFTPSHGLK TNAQWNGSQS VTNLLHPSEI 360 KIVDQQQEFV KRDPAYEFSG GEPQQYDAYP QRPGKPECQY FMKTGYCKFK ATCRYHHPKS 420 NLSFLGLPLR PASNDCKQDG PVEQICEVPL SSEDASNDQR AFLCPSSSDV QSLFTPIQGI 480 QPNVQWNVDQ AVTSLLYPQE TKIINHQQEL ASKDAAYEFS GGEPQQHDEY PQRPGKPECQ 540 FFMKTGQCKF KSACRYHHPK SNLSFPSLPL RSASNNYEQN GSSEQLSEIP LSSENALNDQ 600 RTVLSPSSSN VQGLFTPEQG LWTTQQWNGD QMATNPLHPP EIKKNEEKHE LANTDTAYDL 660 NGGVKSQQLD EYPQRPNEPE CRYFMKTGHC KLKSACRYHH PKSNRSLLTP PLKPDKPICT 720 YYGRGICKFG SACRYSHHME HT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 1e-37 | C3H family protein |