PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020676239.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 489aa    MW: 53356.1 Da    PI: 6.1623
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020676239.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS378.58.5e-1161254711374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                     lv+lL++cA+ ++ +dl la++l+ +++ l    g    + ++  +f+ AL +r++         l p++t+  ++ e    ++ f+e++P lkf
  XP_020676239.1 125 LVHLLMTCADSIQRDDLVLARSLIDEMRLLLPLIGvgYGIGKVSIFFLDALDRRISF--------L-PQPTK--TVLEDEILYSHFYEACPNLKF 208
                     68****************************666554389****************97........3.33333..47777788899********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +h+taNqaIlea++g++rvH+iD+++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+       ++ ++g rLa+fA+++gvpf f++++a rl  
  XP_020676239.1 209 AHFTANQAILEAFNGCDRVHVIDLSLMHGLQWPALIQALALRPGGPPALRLTGIGP-------KTAKVGLRLAEFARSVGVPFTFQAVAAGRL-- 294
                     ********************************************************.......7899********************855555.. PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                        ++ rvkpgEa+a+n+vlqlh ll+e+++++s    vL l+++l+Pk+++vveq+adhn++ Fl+rf+eal yys+lfdsl+a+    +   +
  XP_020676239.1 295 ---DSVRVKPGEAVAINSVLQLHLLLSETGPIDS----VLTLIRELRPKILTVVEQDADHNKPAFLDRFTEALFYYSTLFDSLAAG--GGDGGCS 380
                     ...5569*******************99999988....*********************************************999..4566666 PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        +++l+rei+n+v+ceg+er+erhe +++Wr rl++aGF+p++l+++a  qa++ll+ ++s+gy vee +g+l l W++r+L+s+SaWr
  XP_020676239.1 381 AAAEVYLQREICNIVCCEGSERVERHEPMGRWRVRLGRAGFEPMHLGSNAFRQASMLLKLFSSEGYGVEEVEGCLSLSWHGRSLISASAWR 471
                     667778************************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    
MGRNPYHPKP TDEDSSSASE TDTLLAGVGY TVRSSDLHHV ADRLEKLDST IIAAAASGVP  60
PEFLCSSAIH YNPSDLASWI DSLLTEVPPH SSPSLWTDAT CLPPPSSFSI DAHRLGKEED  120
AGIRLVHLLM TCADSIQRDD LVLARSLIDE MRLLLPLIGV GYGIGKVSIF FLDALDRRIS  180
FLPQPTKTVL EDEILYSHFY EACPNLKFAH FTANQAILEA FNGCDRVHVI DLSLMHGLQW  240
PALIQALALR PGGPPALRLT GIGPKTAKVG LRLAEFARSV GVPFTFQAVA AGRLDSVRVK  300
PGEAVAINSV LQLHLLLSET GPIDSVLTLI RELRPKILTV VEQDADHNKP AFLDRFTEAL  360
FYYSTLFDSL AAGGGDGGCS AAAEVYLQRE ICNIVCCEGS ERVERHEPMG RWRVRLGRAG  420
FEPMHLGSNA FRQASMLLKL FSSEGYGVEE VEGCLSLSWH GRSLISASAW RARADSAVAL  480
VARHRYIIL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-124GRAS family protein