PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020676060.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 395aa MW: 42801.2 Da PI: 7.1428

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020676060.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.2	4.1e-15	212	258	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRdriN+++ +L++llP++ K +Ka++L +++eY+k Lq XP_020676060.1 212 VHNQSERKRRDRINQKMKTLQKLLPNS-----SKTDKASMLDEVIEYLKLLQ 258 6***********************8.....7**************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MSRCVPSWDL DDHLLHRHHH HNTTLPSSAA TADATSVDYD VTELTWNDVG HLTVLGLGKP 60 IPRYPSTAAS TEAASKSGCS GGGGTLESIV DQARSGSHQA AADAMVPCSD ASPRKPTRVD 120 GTNCTSTQGS ATPTVAAGKR TSPLPLAGDE DEERSGGDRA SPETENGSFA GERPLGVDEH 180 DSISHTLRSQ RNGLEERGIT PISAKRSREA AVHNQSERKR RDRINQKMKT LQKLLPNSSK 240 TDKASMLDEV IEYLKLLQAQ VQMMSRMSTI PTMILPFAMQ NQQLQLSMIA QMAQITRMGL 300 SLGMVDPGLL NPAPPPPPIL HPSTFLPLPS TAAGAWDARA TEWMQQQGRR LLPDMLPAFM 360 GCPTQQQPMS SEAYSRLATL YQQLYQQPLG SNQKP

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MSRCVPSWDL DDHLLHRHHH HNTTLPSSAA TADATSVDYD VTELTWNDVG HLTVLGLGKP  60
IPRYPSTAAS TEAASKSGCS GGGGTLESIV DQARSGSHQA AADAMVPCSD ASPRKPTRVD  120
GTNCTSTQGS ATPTVAAGKR TSPLPLAGDE DEERSGGDRA SPETENGSFA GERPLGVDEH  180
DSISHTLRSQ RNGLEERGIT PISAKRSREA AVHNQSERKR RDRINQKMKT LQKLLPNSSK  240
TDKASMLDEV IEYLKLLQAQ VQMMSRMSTI PTMILPFAMQ NQQLQLSMIA QMAQITRMGL  300
SLGMVDPGLL NPAPPPPPIL HPSTFLPLPS TAAGAWDARA TEWMQQQGRR LLPDMLPAFM  360
GCPTQQQPMS SEAYSRLATL YQQLYQQPLG SNQKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	217	222	ERKRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67110.1	1e-24	bHLH family protein