PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020675640.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

TALE

Protein Properties

Length: 590aa MW: 66083.7 Da PI: 6.73

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020675640.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.3	6.3e-09	371	408	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + XP_020675640.1 371 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 408 664459******************************88 PP
2	BELL	107.4	8.9e-35	234	302	4	72
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 elqk+kakLl+lleeVd++Y++y+eq+++v+ssFe vag gsa+ Y +lA+ka+SrhFr+L+d i++qi XP_020675640.1 234 ELQKRKAKLLTLLEEVDRKYRRYCEQMRAVVSSFESVAGEGSATTYLALASKAMSRHFRSLRDGIVSQI 302 89******************************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence
MAQEHQHQAA MGYGEYSMQG YEASGSHELY NLQTRMEMLG FPSKHHHHHQ QNQNQHNPET 60 SWRSGGLFLR PGSDSPASES LMISPDAVAD WDQPRQLVVD DSLRCLFPVH DEEQPSQGLS 120 LSLYNPEPSV VVDSAADYHR SLMFSRPTNS NSTVSHQQGF SFHSAQTSGS VSSSTHKLRL 180 SKYLIPTQEL LNEFCDLGGV KSSKQKQQSK RFEEGGPSSL SPVSPSLQNL DILELQKRKA 240 KLLTLLEEVD RKYRRYCEQM RAVVSSFESV AGEGSATTYL ALASKAMSRH FRSLRDGIVS 300 QIQAAKKTMG EKDPIAPGIS RGDTPRLKLL DQCFRQQKAF QQGGLLMEQH PWRPQRGLPE 360 RSVSILRAWL FEHFLHPYPS DVDKHILARQ TGLSRSQVSN WFINARVRLW KPMIEEMYTE 420 ELKEREIQST GAQEDDRNPN PSCSRDVAIT DEQKPLAAEL LTEPDSLSSI INHHSEARPH 480 HTNPRDQIQL QRTENFGIAD LHFSSYNGCG SQSYSGNGVS LTLGLQHHDG SGGGGGMGFS 540 LSPTNPQPLF YSRGQMEECQ PVQFSILDGE VQNLPYRNLM GAQLLHDLAG

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence

MAQEHQHQAA MGYGEYSMQG YEASGSHELY NLQTRMEMLG FPSKHHHHHQ QNQNQHNPET  60
SWRSGGLFLR PGSDSPASES LMISPDAVAD WDQPRQLVVD DSLRCLFPVH DEEQPSQGLS  120
LSLYNPEPSV VVDSAADYHR SLMFSRPTNS NSTVSHQQGF SFHSAQTSGS VSSSTHKLRL  180
SKYLIPTQEL LNEFCDLGGV KSSKQKQQSK RFEEGGPSSL SPVSPSLQNL DILELQKRKA  240
KLLTLLEEVD RKYRRYCEQM RAVVSSFESV AGEGSATTYL ALASKAMSRH FRSLRDGIVS  300
QIQAAKKTMG EKDPIAPGIS RGDTPRLKLL DQCFRQQKAF QQGGLLMEQH PWRPQRGLPE  360
RSVSILRAWL FEHFLHPYPS DVDKHILARQ TGLSRSQVSN WFINARVRLW KPMIEEMYTE  420
ELKEREIQST GAQEDDRNPN PSCSRDVAIT DEQKPLAAEL LTEPDSLSSI INHHSEARPH  480
HTNPRDQIQL QRTENFGIAD LHFSSYNGCG SQSYSGNGVS LTLGLQHHDG SGGGGGMGFS  540
LSPTNPQPLF YSRGQMEECQ PVQFSILDGE VQNLPYRNLM GAQLLHDLAG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41410.1	1e-113	TALE family protein