PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020674549.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | YABBY | ||||||||
Protein Properties | Length: 222aa MW: 24419.9 Da PI: 6.8983 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 243.2 | 5.1e-75 | 18 | 184 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlk..snvekeesastsvss 98 seq+Cyv+CnfC+t+lavsvP+tslfk+vtvrCGhCt+llsvn++ a + hl++ + +++++l e ++ ++ + + s+++s+ XP_020674549.1 18 PSEQLCYVHCNFCDTVLAVSVPYTSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQLHLGHPFLAPVQHNLLEEVLSCPppNLMMDQPNLSNNNSM 112 68******************************************9999999999999********999998887776422567777778888888 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + ++ee+p+++ v+rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ihfgl XP_020674549.1 113 PPAAKGTEEELPQTQIVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGL 184 88899********999******************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence |
MSSSSAAAFS LEHLSPPPSE QLCYVHCNFC DTVLAVSVPY TSLFKTVTVR CGHCTNLLSV 60 NMRGLLLPAA NQLHLGHPFL APVQHNLLEE VLSCPPPNLM MDQPNLSNNN SMPPAAKGTE 120 EELPQTQIVN RPPEKRQRVP SAYNRFIKDE IQRIKAGNPD ITHREAFSAA AKNWAHFPHI 180 HFGLIPDQTL KKTSVHPPEG EDVLLKDGFF AAAAANMEVA PF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 7e-81 | YABBY family protein |