PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020674240.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

TALE

Protein Properties

Length: 399aa MW: 45153.4 Da PI: 6.5544

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020674240.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	20.5	8.1e-07	342	375	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e+++ L +++gL+ +q+ +WF N+R + XP_020674240.1 342 KWPYPTEEDKALLVQETGLQLKQINNWFINQRKR 375 569*****************************87 PP
2	ELK	28.9	2.6e-10	296	317	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ XP_020674240.1 296 ELKHELKQGYKEKIVDIREEIL 317 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MAFPNHLLPQ EISMPAKQTS LVLKPTFPDE DEDLNPRSST QPPPPSHHLF PNGSNNVPTW 60 LNTAIHRDQQ AHHCSDNTRY IHLHTASDSS EDRWLHIPAG AGEVSRAAPT GQRRESGWDR 120 VQGDWQSARY KTEIMAHPLY EQLLSAHVAC LRIATPIDQL PRIDAQLARS REIVAKYSVL 180 CGGGAGEIAD GDGKELDRFM THYVLLLCSF REQLQQHVRV HAMEAVMACW ELEQSLQSLT 240 GISPNEGTGA TMSDDEDDNS DSGNNFYDGN LDEHDSMGFG LPTESERTLM ERVREELKHE 300 LKQGYKEKIV DIREEILRKR RAGKLPGETT SLLKAWWKSH SKWPYPTEED KALLVQETGL 360 QLKQINNWFI NQRKRNWHSS PSSSTMTKSK RKSNAGHTG

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MAFPNHLLPQ EISMPAKQTS LVLKPTFPDE DEDLNPRSST QPPPPSHHLF PNGSNNVPTW  60
LNTAIHRDQQ AHHCSDNTRY IHLHTASDSS EDRWLHIPAG AGEVSRAAPT GQRRESGWDR  120
VQGDWQSARY KTEIMAHPLY EQLLSAHVAC LRIATPIDQL PRIDAQLARS REIVAKYSVL  180
CGGGAGEIAD GDGKELDRFM THYVLLLCSF REQLQQHVRV HAMEAVMACW ELEQSLQSLT  240
GISPNEGTGA TMSDDEDDNS DSGNNFYDGN LDEHDSMGFG LPTESERTLM ERVREELKHE  300
LKQGYKEKIV DIREEILRKR RAGKLPGETT SLLKAWWKSH SKWPYPTEED KALLVQETGL  360
QLKQINNWFI NQRKRNWHSS PSSSTMTKSK RKSNAGHTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11060.1	1e-143	TALE family protein