PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G11060.1 | ||||||||
Common Name | KNAT4, T5K6_50 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TALE | ||||||||
Protein Properties | Length: 393aa MW: 44385.1 Da PI: 6.268 | ||||||||
Description | KNOTTED1-like homeobox gene 4 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.4 | 1e-07 | 333 | 365 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp++e++++L +++gL+ +q+ +WF N+R + AT5G11060.1 333 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 365 69*****************************87 PP | |||||||
2 | ELK | 28.9 | 2.5e-10 | 286 | 307 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ AT5G11060.1 286 ELKHELKQGYKEKIVDIREEIL 307 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.0E-19 | 121 | 165 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.0E-17 | 124 | 164 | IPR005540 | KNOX1 |
SMART | SM01256 | 4.3E-28 | 177 | 232 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.7E-20 | 182 | 231 | IPR005541 | KNOX2 |
SMART | SM01188 | 6.1E-4 | 286 | 307 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.969 | 286 | 306 | IPR005539 | ELK domain |
Pfam | PF03789 | 9.0E-7 | 286 | 307 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.758 | 306 | 369 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.2E-11 | 308 | 373 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-16 | 308 | 372 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.66E-11 | 309 | 370 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-25 | 313 | 370 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.1E-17 | 326 | 365 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000005 | anatomy | cultured plant cell | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0003011 | anatomy | root vascular system | ||||
PO:0005059 | anatomy | root endodermis | ||||
PO:0005417 | anatomy | phloem | ||||
PO:0006203 | anatomy | pericycle | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025181 | anatomy | root elongation zone | ||||
PO:0025257 | anatomy | primary root elongation zone | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001031 | developmental stage | 4 root elongation stage | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MAFHNNHFNH FTDQQQHQPP PPPQQQQQQH FQESAPPNWL LRSDNNFLNL HTAASAAATS 60 SDSPSSAAAN QWLSRSSSFL QRGNTANNNN NETSGDVIED VPGGEESMIG EKKEAERWQN 120 ARHKAEILSH PLYEQLLSAH VACLRIATPV DQLPRIDAQL AQSQNVVAKY STLEAAQGLL 180 AGDDKELDHF MTHYVLLLCS FKEQLQQHVR VHAMEAVMAC WEIEQSLQSF TGVSPGEGTG 240 ATMSEDEDEQ VESDAHLFDG SLDGLGFGPL VPTESERSLM ERVRQELKHE LKQGYKEKIV 300 DIREEILRKR RAGKLPGDTT SVLKSWWQSH SKWPYPTEED KARLVQETGL QLKQINNWFI 360 NQRKRNWHSN PSSSTVSKNK RRSNAGENSG RDR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 7e-13 | 309 | 373 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.5377 | 0.0 | flower| inflorescence| silique |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 245901_at | 0.0 | ||||
Expression Atlas | AT5G11060 | - | ||||
AtGenExpress | AT5G11060 | - | ||||
ATTED-II | AT5G11060 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | A member of Class II KN1-like homeodomain transcription factors (together with KNAT3 and KNAT5), with greatest homology to the maize knox1 homeobox protein. Expression regulated by light. Detected in all tissues examined, but most prominent in leaves and young siliques. Transient expression of GFP translational fusion protein suggests bipartite localization in nucleus and cytoplasm. KNAT4 promoter activity showed cell-type specific pattern along longitudinal root axis; GUS expression pattern started at the elongation zone, predominantly in the phloem and pericycle cells, extending to endodermis toward the base of the root. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G11060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT5G25220, AT1G62990 | |||||
IntAct | Search P48001 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G11060 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118296 | 0.0 | AK118296.1 Arabidopsis thaliana At5g11060 mRNA for putative HOMEOBOX PROTEIN KNOTTED-1 LIKE 4 (KNAT4), complete cds, clone: RAFL19-58-H14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_196667.2 | 0.0 | homeobox protein knotted-1-like 4 | ||||
Swissprot | P48001 | 0.0 | KNAT4_ARATH; Homeobox protein knotted-1-like 4 | ||||
TrEMBL | A0A178UC59 | 0.0 | A0A178UC59_ARATH; KNAT4 | ||||
STRING | AT5G11060.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM444 | 28 | 158 | Representative plant | OGRP167 | 17 | 148 |
Link Out ? help Back to Top | |
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Phytozome | AT5G11060.1 |
Entrez Gene | 830973 |
iHOP | AT5G11060 |
wikigenes | AT5G11060 |