PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020673932.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 1329aa MW: 146945 Da PI: 8.8894

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020673932.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0017	1295	1321	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y C Cg++F+ s++ rH r+ H XP_020673932.1 1295 YICRepGCGQTFRFVSDFSRHKRKtnH 1321 889999****************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1329 aa Download sequence
MAVEPPSVEI LPWLKSLPAA PEYRPTLSEF QDPIAYILKI EKEASAYGIC KIVPPLPAAP 60 KKTAFANLNK SFAARLPNSS TSPSPNPSPN SNSKRSPIFS TRHQQIGFCP RRPRPVQKPV 120 WQSGDCYTLS QFEAKAKLFE LSYLSKTAPA TAAAAAAAAS GAFSLKKKKK KHMNRQKRSS 180 KLSSSSLSAL ELETLYWKAC ADKPFSVEYA NDIPGSGFPP IGSTTGKRWR EEEAASNVGE 240 TAWNMRGVSR AKGSLLRFMK EEIPGVTSPM VYVAMMFSWF AWHVEDHELH SMNYLHLGAG 300 KTWYGVPRDA ALAFEDIVRI HGYCGEVNPL MTFTILGEKT TVMSPEVLID AGIPCCRLVQ 360 NAGEFVVTFP GSYHCGFSHG FNCGEAANIA TPGWLRVAKE AAIRRASTNY PPMVSHYQLL 420 YALALSLCSR MPMCGNNEPR SSRLKDKIRG EGELMIKKTF VQSVVETNGL LSSLLEKGSS 480 CIVLPRDTSD SPLSSNLLVR SQVKVKPRLS LGLCSREEAL KASRTLPSDD VMLDRNTGMK 540 HLSGFGSLKG NSVAVYHRKK HAATSNNKSV TTEVASSMLE LRNLKEEKES NLEADGLLDQ 600 GLLSCVTCGI LSFACVAVVE PREAAARYLT SAGCCSLIDQ GFCSGEITDV AHDTKLQGGN 660 GCLGRIDGDV KERFAEDTDH SSRYSTFVSH PIEVGSEISE QNGISALDLL ASAYGGESSD 720 SDVERLPNEM SYKLDNDRVA TKHPDLWFGK VPFAEVEQEL VGAKCHNVVP AENSLCTTSN 780 DPNNLRSEIA DDRCLLKLES SRCCKPEQKK SLVLHSIEDG GQVPTSSNSI WPLEGPIHSS 840 SKDATPSSDD FSVCVAPSYG IDVPCENSNG AAHLISYHSD MKKAAVEAMQ RSDKDSSRMH 900 VFCLQHAMEV EKKLCSVGGV HIMLLCHPDY PKIEAEAKAL AEELGISYAW NKIDFREAAE 960 KDHEKIQAAL KDEESIPTNS DWAVKLGINL YYSASLSKSP LYSKQMPYNA VIYKSFSCNS 1020 PNSSSGKTKN SGRKPGRQKK IVVAGKWCGK VWMSNQVHPY LAERKDSQDE EAEEGPFMRG 1080 GITNPNSVIG PESKGSYAND SSSISREPKK RKKKPMQKSN EKRQRLNKSN NFLKAIEDDD 1140 KISQKNKGRI LRSSHSRLKH KDETEGGPSS RLRKRPMKFD ETKIVKPCFK KPNESRTKGG 1200 QPPKSNDDEG EYTCDIDGCS LSFGTKQELS LHKRDICPVK GCGKKLFSHK YMMQHRKVHM 1260 DDRPLECPWK GCKMTFKWAW ARTEHIRVHT GDRPYICREP GCGQTFRFVS DFSRHKRKTN 1320 HSAKKSRRS

Sequence ? help Back to Top

Protein Sequence Length: 1329 aa Download sequence

MAVEPPSVEI LPWLKSLPAA PEYRPTLSEF QDPIAYILKI EKEASAYGIC KIVPPLPAAP  60
KKTAFANLNK SFAARLPNSS TSPSPNPSPN SNSKRSPIFS TRHQQIGFCP RRPRPVQKPV  120
WQSGDCYTLS QFEAKAKLFE LSYLSKTAPA TAAAAAAAAS GAFSLKKKKK KHMNRQKRSS  180
KLSSSSLSAL ELETLYWKAC ADKPFSVEYA NDIPGSGFPP IGSTTGKRWR EEEAASNVGE  240
TAWNMRGVSR AKGSLLRFMK EEIPGVTSPM VYVAMMFSWF AWHVEDHELH SMNYLHLGAG  300
KTWYGVPRDA ALAFEDIVRI HGYCGEVNPL MTFTILGEKT TVMSPEVLID AGIPCCRLVQ  360
NAGEFVVTFP GSYHCGFSHG FNCGEAANIA TPGWLRVAKE AAIRRASTNY PPMVSHYQLL  420
YALALSLCSR MPMCGNNEPR SSRLKDKIRG EGELMIKKTF VQSVVETNGL LSSLLEKGSS  480
CIVLPRDTSD SPLSSNLLVR SQVKVKPRLS LGLCSREEAL KASRTLPSDD VMLDRNTGMK  540
HLSGFGSLKG NSVAVYHRKK HAATSNNKSV TTEVASSMLE LRNLKEEKES NLEADGLLDQ  600
GLLSCVTCGI LSFACVAVVE PREAAARYLT SAGCCSLIDQ GFCSGEITDV AHDTKLQGGN  660
GCLGRIDGDV KERFAEDTDH SSRYSTFVSH PIEVGSEISE QNGISALDLL ASAYGGESSD  720
SDVERLPNEM SYKLDNDRVA TKHPDLWFGK VPFAEVEQEL VGAKCHNVVP AENSLCTTSN  780
DPNNLRSEIA DDRCLLKLES SRCCKPEQKK SLVLHSIEDG GQVPTSSNSI WPLEGPIHSS  840
SKDATPSSDD FSVCVAPSYG IDVPCENSNG AAHLISYHSD MKKAAVEAMQ RSDKDSSRMH  900
VFCLQHAMEV EKKLCSVGGV HIMLLCHPDY PKIEAEAKAL AEELGISYAW NKIDFREAAE  960
KDHEKIQAAL KDEESIPTNS DWAVKLGINL YYSASLSKSP LYSKQMPYNA VIYKSFSCNS  1020
PNSSSGKTKN SGRKPGRQKK IVVAGKWCGK VWMSNQVHPY LAERKDSQDE EAEEGPFMRG  1080
GITNPNSVIG PESKGSYAND SSSISREPKK RKKKPMQKSN EKRQRLNKSN NFLKAIEDDD  1140
KISQKNKGRI LRSSHSRLKH KDETEGGPSS RLRKRPMKFD ETKIVKPCFK KPNESRTKGG  1200
QPPKSNDDEG EYTCDIDGCS LSFGTKQELS LHKRDICPVK GCGKKLFSHK YMMQHRKVHM  1260
DDRPLECPWK GCKMTFKWAW ARTEHIRVHT GDRPYICREP GCGQTFRFVS DFSRHKRKTN  1320
HSAKKSRRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1108	1115	PKKRKKKP
2	1109	1113	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein