PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020673610.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 577aa MW: 62765.7 Da PI: 7.6403

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020673610.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.3	1.9e-06	243	263	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C Gd C +aHg XP_020673610.1 243 PCPEFRK-GSCLKGDACEYAHG 263 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence
MCQGTRKQSP PPPEEAVALL LELSAADDLA TFKQAVEETD LTLDAAAPWY SRSVGPAASP 60 SRRMGYELRT PLQISALYGS TAVLSYILDR KSVDVNRPCG SDGATALHCA AGGGSAASLN 120 TVKLLIEASA DVDGVDAKGH RPGDVIAKQF SSSIARELEV LLKAPFPTVS SPSNKEKKEY 180 PSDITLPDIK NGIYGTDEFR MYTFKVKPCS RAYSHDWTEC PFVHPGENAR RRDPRKYSYS 240 CVPCPEFRKG SCLKGDACEY AHGVFESWLH PAQYRTRLCK DEIGCNRRVC FFAHRQDELR 300 TVNPTIASVS GLGLSSPKMS LMGVSSLDMA TALMLSSSAS SAMGPSSAWM NSAGSLVQSS 360 SSRMTSSLSF RDLDFDPDLM GLDGVQQKML DEISNAGSPH LNWKANSLKQ VAGAFTGHQM 420 KQQLLTGYGS NLPSPGLNSS SSFNLDHSIA KAIVNSRQAA FAKRSQSFID RELSSRHTVL 480 SPPPSPSPSF GLCDWVSPDG KLDWGIQGDE LNKLRKSATF NLRSNESWPK AQAMSGPVVP 540 PISRPGFERY QKQYQNNGAG DYLSWEQLYA EQEQLVA

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence

MCQGTRKQSP PPPEEAVALL LELSAADDLA TFKQAVEETD LTLDAAAPWY SRSVGPAASP  60
SRRMGYELRT PLQISALYGS TAVLSYILDR KSVDVNRPCG SDGATALHCA AGGGSAASLN  120
TVKLLIEASA DVDGVDAKGH RPGDVIAKQF SSSIARELEV LLKAPFPTVS SPSNKEKKEY  180
PSDITLPDIK NGIYGTDEFR MYTFKVKPCS RAYSHDWTEC PFVHPGENAR RRDPRKYSYS  240
CVPCPEFRKG SCLKGDACEY AHGVFESWLH PAQYRTRLCK DEIGCNRRVC FFAHRQDELR  300
TVNPTIASVS GLGLSSPKMS LMGVSSLDMA TALMLSSSAS SAMGPSSAWM NSAGSLVQSS  360
SSRMTSSLSF RDLDFDPDLM GLDGVQQKML DEISNAGSPH LNWKANSLKQ VAGAFTGHQM  420
KQQLLTGYGS NLPSPGLNSS SSFNLDHSIA KAIVNSRQAA FAKRSQSFID RELSSRHTVL  480
SPPPSPSPSF GLCDWVSPDG KLDWGIQGDE LNKLRKSATF NLRSNESWPK AQAMSGPVVP  540
PISRPGFERY QKQYQNNGAG DYLSWEQLYA EQEQLVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-135	C3H family protein