PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020673563.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | C3H | ||||||||
Protein Properties | Length: 285aa MW: 31722.9 Da PI: 8.5742 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.8 | 9.1e-09 | 3 | 22 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tG C++G+ CkF+H++ XP_020673563.2 3 HYLETGKCNFGPACKFHHPK 22 8*****************96 PP | |||||||
2 | zf-CCCH | 35.5 | 1.7e-11 | 44 | 68 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f++ tG+CkyG +CkF+H++ XP_020673563.2 44 EVDCKFYLSTGWCKYGKTCKFNHPE 68 689********************96 PP | |||||||
3 | zf-CCCH | 42.7 | 9.5e-14 | 160 | 184 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ffa+tG Ck+G+rC+F+H+ XP_020673563.2 160 DEPDCPFFAKTGSCKFGSRCRFNHP 184 6899********************8 PP | |||||||
4 | zf-CCCH | 30.1 | 8.2e-10 | 205 | 230 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+ r G+C+yG++CkF H+ XP_020673563.2 205 PGEPKCSFYGRHGYCRYGSTCKFDHP 230 57899********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence |
MGHYLETGKC NFGPACKFHH PKDIPGIIKP VQFNALGYPL RQYEVDCKFY LSTGWCKYGK 60 TCKFNHPEPS NSMHWWLSRT TPGQTLFPGE LTSFNASPHW QVPSSYVQVV YPQGFAQVPS 120 WNTFPYYLNQ QQYYGNDQFV GSGAAMDPPA SYSSFPVRPD EPDCPFFAKT GSCKFGSRCR 180 FNHPIGQITL TSNCELSPMG LPLRPGEPKC SFYGRHGYCR YGSTCKFDHP IAAPNVPVVR 240 QPLESSSGPA TLTLSAESSS VASPGKLKCL PSSKRQKMNS DDEKV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 4e-66 | C3H family protein |