PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020672817.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MYB | ||||||||
Protein Properties | Length: 252aa MW: 28408.3 Da PI: 9.8335 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.2 | 5.9e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed+ll ++ +G g W+t++ + g++R++k+c++rw++yl XP_020672817.1 14 KGAWTTVEDKLLTAFINIHGEGKWTTVPYKAGLKRSGKSCRLRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.2 | 3.3e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eE +l+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_020672817.1 67 RGNFSEEENDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 89********************.*********.************87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence |
MGRNSCSFKE GLNKGAWTTV EDKLLTAFIN IHGEGKWTTV PYKAGLKRSG KSCRLRWLNY 60 LRPNVKRGNF SEEENDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKIASFQH 120 QPHQPSRPSI IQRPPASNLI FPSPSSSTPS QATNNDKTLI RTTAIRCNNV IIPMQLPSSS 180 TSKKDIPSMQ LAEESMAKVA SDMPKSSKVG PMVEEELFKE FFQLDENMVL NYNSFDDDTN 240 VAFPTQASVM EF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 7e-57 | MYB family protein |