PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020672813.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 290aa MW: 32704 Da PI: 4.9455

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020672813.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.2	6.1e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed+ll ++ +G g W+t++ + g++R++k+c++rw++yl XP_020672813.1 14 KGAWTTAEDKLLTAFINIHGEGKWTTVPYKAGLKRSGKSCRLRWLNYL 61 79********************************************97 PP
2	Myb_DNA-binding	57.1	4.2e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eEd+l+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_020672813.1 67 RGNFSEEEDDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNTT 111 89******************.*****.**********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MGRNSCSFKE GLNKGAWTTA EDKLLTAFIN IHGEGKWTTV PYKAGLKRSG KSCRLRWLNY 60 LRPNVKRGNF SEEEDDLIIR LHKLLGNRWS LIAGRIPGRT DNEIKNYWNT TLGKIASFQH 120 QRHQPCRPSI MQRPPACNLI VPSPSCSTPL QATKNDNTLI RTTAIRCNNV AIPKQLPSSS 180 TSNPDIPSMQ LAEDSMVKVA SEMPESSKVG PMVEEELFKE LFQLEENIVL NYNTFDDDNN 240 DAFPAQASVM EFEGLQDFET WMLNDEDVDC LPDDDQMQLL TSLFDIGGGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	2e-55	MYB family protein