PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020672591.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 247aa MW: 27717.1 Da PI: 4.5394 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.4 | 3.4e-20 | 50 | 101 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +eq+++Le++Fe +++++ e++++LA++lgL+ rqV vWFqNrRa++k XP_020672591.1 50 RRLGTEQVRALERCFEVENKLDPERKARLAQELGLQPRQVAVWFQNRRARWK 101 46789**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129.2 | 1.6e-41 | 48 | 139 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrl +eqv++LE++Fe e+kL+perK++la+eLglqprqvavWFqnrRAR+ktkqlE+d+++Lk++yd+l+ + ++L++++++L +el++ XP_020672591.1 48 KKRRLGTEQVRALERCFEVENKLDPERKARLAQELGLQPRQVAVWFQNRRARWKTKQLERDFATLKSRYDTLRIDFDALRRDNHSLLAELAD 139 9*************************************************************************************999875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MKRPAASDSI ITPFFSSEER GEMVLEEEDD DDEICCAAEG GGVGGGLKKR RLGTEQVRAL 60 ERCFEVENKL DPERKARLAQ ELGLQPRQVA VWFQNRRARW KTKQLERDFA TLKSRYDTLR 120 IDFDALRRDN HSLLAELADL KSKLGPVTAV DNELVVAAAK LEEEKKEVVR PFPPPVMAGD 180 GSSDSDSSVV LTDDNRLEGG LVYQAQQMFK IEEHSFFGGE EPCSASFFSD EHVPTLTWFC 240 TDLTGGW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 73 | 79 | ERKARLA |
2 | 96 | 104 | RRARWKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 1e-45 | HD-ZIP family protein |