PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020672526.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 631aa MW: 74550.6 Da PI: 7.3568

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020672526.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.7	8.1e-08	219	238	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G+rC++ H XP_020672526.1 219 CPFHLKTGACRFGSRCSRVH 238 ******************99 PP
2	zf-CCCH	30.1	8.3e-10	309	336	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C +++t tC++G+ C+F+H+ XP_020672526.1 309 WKVAICGEYMKTRlkTCSHGSACNFIHC 336 899************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 631 aa Download sequence
MANPVNGEMS QEEAFAVCGG KQSRKEKRKV LKKLKRKQAR RIAAIREREM AEFLLNDPEE 60 QLLLRLREQE EADNAEKERR EYEERERVWL EAAAARKSRE EEDERRKKLL QEEERKQNEH 120 DYGAEGDVEH EYVDEGPAEI IWQGNEIIVK KRRVKVAKKI VEQIPDKEDD DRPTSNTLPP 180 QSATFASYVQ GETITAQEII DSVAQKIPNF GTEQDKAHCP FHLKTGACRF GSRCSRVHFY 240 PEKSSTLLIK NMYNGPGLTC EQDEGLEYTD EEVDHSYEEF YEDVHTEFLK FGEIVNFKII 300 CEFVGVTRWK VAICGEYMKT RLKTCSHGSA CNFIHCFRNP GGDYEWADWD NPPPTYWIKR 360 MIFLFGTSVE SGYGKELDSE DYKRHREQER MRKPKNYRHQ SERFHYKEMD LNNSSSDGEE 420 LNSKKLQQTR YSTKRDRSIK RRGRLVSENK NELLSENHRS EERFHSKSFF SHCDDAGECT 480 SKEAIEGSIK KHRRYVSKTP EHDRRDESEN RSSSSRRKIK LLYSDEKENS EPKSHKKQKK 540 NQVKDRHLEN SDWDSFRSKD QFNEECISED PDSEKDSDGV RYHYSKRRKY DKHRSHRSHK 600 HRYITDKVRK GGEESDGSPG RWKVSEEDFS R

Sequence ? help Back to Top

Protein Sequence Length: 631 aa Download sequence

MANPVNGEMS QEEAFAVCGG KQSRKEKRKV LKKLKRKQAR RIAAIREREM AEFLLNDPEE  60
QLLLRLREQE EADNAEKERR EYEERERVWL EAAAARKSRE EEDERRKKLL QEEERKQNEH  120
DYGAEGDVEH EYVDEGPAEI IWQGNEIIVK KRRVKVAKKI VEQIPDKEDD DRPTSNTLPP  180
QSATFASYVQ GETITAQEII DSVAQKIPNF GTEQDKAHCP FHLKTGACRF GSRCSRVHFY  240
PEKSSTLLIK NMYNGPGLTC EQDEGLEYTD EEVDHSYEEF YEDVHTEFLK FGEIVNFKII  300
CEFVGVTRWK VAICGEYMKT RLKTCSHGSA CNFIHCFRNP GGDYEWADWD NPPPTYWIKR  360
MIFLFGTSVE SGYGKELDSE DYKRHREQER MRKPKNYRHQ SERFHYKEMD LNNSSSDGEE  420
LNSKKLQQTR YSTKRDRSIK RRGRLVSENK NELLSENHRS EERFHSKSFF SHCDDAGECT  480
SKEAIEGSIK KHRRYVSKTP EHDRRDESEN RSSSSRRKIK LLYSDEKENS EPKSHKKQKK  540
NQVKDRHLEN SDWDSFRSKD QFNEECISED PDSEKDSDGV RYHYSKRRKY DKHRSHRSHK  600
HRYITDKVRK GGEESDGSPG RWKVSEEDFS R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	155	KKRRVK
2	516	539	RRKIKLLYSDEKENSEPKSHKKQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-111	C3H family protein