PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020672492.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

G2-like

Protein Properties

Length: 351aa MW: 39367.9 Da PI: 8.6108

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020672492.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.4	1.4e-27	98	152	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++Wtp+LH+rFv+aveqL G +kA+P++ile+m+++ Lt+++v+SHLQkYR++ XP_020672492.1 98 KVKVDWTPDLHRRFVQAVEQL-GLDKAVPSRILEIMGIHNLTRHNVASHLQKYRTH 152 5689***************.******************************97 PP
2	Myb_DNA-binding	41	4.6e-13	101	150	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT++++ ++v+av+qlG + +++I + mg ++t+ ++ s++qky+ XP_020672492.1 101 VDWTPDLHRRFVQAVEQLGLDkaVPSRILEIMGiHNLTRHNVASHLQKYR 150 57***********************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MLALSPLPNS GAEDREGICD AFLGDDFLEN IDFSCIFEGF DVDGDLFPAE LQLSEPQRRF 60 SAGGEDQEKS SSQEREEKKD ELTCAKATAV KRSHGKKKVK VDWTPDLHRR FVQAVEQLGL 120 DKAVPSRILE IMGIHNLTRH NVASHLQKYR THRKHLLARE AEAASWSQRR LIYNAKNVKK 180 KENKPWISPS IGFPPSQFRP LHVWGHPTLD GPPMVHPWPP RPPNYIAYWQ PHYQRGAAEG 240 WGPSAVISAP HFMPHPLPVM RFAPPPVAGV PQPIYRPQHW VSPLKTQSNL QPEHAHYPSK 300 ESIDAAIGDV LAKPWLPLPL GLKPPSTESV LVELQRQGVS KVPPGCSPEV N

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MLALSPLPNS GAEDREGICD AFLGDDFLEN IDFSCIFEGF DVDGDLFPAE LQLSEPQRRF  60
SAGGEDQEKS SSQEREEKKD ELTCAKATAV KRSHGKKKVK VDWTPDLHRR FVQAVEQLGL  120
DKAVPSRILE IMGIHNLTRH NVASHLQKYR THRKHLLARE AEAASWSQRR LIYNAKNVKK  180
KENKPWISPS IGFPPSQFRP LHVWGHPTLD GPPMVHPWPP RPPNYIAYWQ PHYQRGAAEG  240
WGPSAVISAP HFMPHPLPVM RFAPPPVAGV PQPIYRPQHW VSPLKTQSNL QPEHAHYPSK  300
ESIDAAIGDV LAKPWLPLPL GLKPPSTESV LVELQRQGVS KVPPGCSPEV N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20570.1	2e-64	G2-like family protein