PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_020672291.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 233aa MW: 25869.9 Da PI: 7.8814 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.9 | 1.5e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l +++ +G g +W + +++ g++R++k+c++rw++yl XP_020672291.1 14 RGPWSPEEDAALRSYIHNHGFGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.5 | 8.2e-15 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++T+eEd+ + + ++ G++ W+ Ia++++ gRt++++k++w++ XP_020672291.1 69 GSFTKEEDDMIFTLYNKIGSR-WSVIASKLP-GRTDNDVKNHWNT 111 79*******************.*********.***********97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence |
MGRAPCCDKA NVKRGPWSPE EDAALRSYIH NHGFGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPDIKHGS FTKEEDDMIF TLYNKIGSRW SVIASKLPGR TDNDVKNHWN TKLKKRVMEG 120 KASHSSSYQR SSIPLLSAQS LIPSAQASSS TSCVLTPAIG NQEFQSSYDS LDSSLQQEVY 180 RGGSEYGFLW ELDFGSITDL LSSSGFDDTI PSIWADDSGE GKLGELPQSV SYY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49690.1 | 4e-69 | MYB family protein |