PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020672048.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 231aa MW: 27506.9 Da PI: 7.548

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020672048.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53	7.9e-17	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed+ll + vk++G g+W+ ++r g++R++k+c++rw +yl XP_020672048.1 16 KGPWTPQEDKLLTEHVKLHGEGRWNCVSRLTGLKRSGKSCRLRWVNYL 63 79********************************************97 PP
2	Myb_DNA-binding	54.7	2.3e-17	69	113	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+ E+ +++d+++++G++ W+tIar ++ gRt++++k++w+++ XP_020672048.1 69 RGKITPHEETIILDLHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 113 8999****************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence
MEGQYGWGTF EDGWRKGPWT PQEDKLLTEH VKLHGEGRWN CVSRLTGLKR SGKSCRLRWV 60 NYLRPDLKRG KITPHEETII LDLHAKWGNR WSTIARSLPG RTDNEIKNYW RTHFKKGKPT 120 KNIERARARF FKQQQEQKQK LQQLQQQQQQ QQCQLEVPQF EEIVIAQEMQ EMTYIYNMPY 180 MFQGEEFNGK STASSDEKSS DDEAYYATWE NLWNLDDLGL DMGDEALPFY Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	2e-67	MYB family protein