PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cz12g20100.t1

Organism

Chromochloris zofingiensis

Taxonomic ID

31302

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris

Family

AP2

Protein Properties

Length: 810aa MW: 85737.5 Da PI: 7.3886

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cz12g20100.t1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	38.3	3.3e-12	419	482	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng......kr..krfslgkfgtaeeAakaaiaarkkleg 55 s ykGV++++++g+W+A+++d ++ ++ ++++lg + t+e A a+++a++ ++g Cz12g20100.t1 419 STYKGVTRHRWTGKWEAHLWDaT-ApRKtkgsggRTrgRQVYLGGYETEEAASHAYDRAALVYWG 482 56*****************54.45445557773357********************98875 PP
2	AP2	50.1	6.7e-16	525	576	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+++++ g+W+A+I + + +++ +lg+f ++eeAa+a+++a+++++g Cz12g20100.t1 525 SRYRGVTRHHQHGKWEARIGRVAN---NRYQYLGTFNSEEEAARAYDKAALSYRG 576 79**************998533...4***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 810 aa Download sequence
MPHQHANSTS SVHDVTSMAG VPTASYMVPL SALSPPSQHT ITHHTSTVHQ PHGQLSALQP 60 VMCHPIPTYG QLLPVSYDRP SSVNSTSNQD PPTTPIHNVP ANTMTAQSFG LYPNQFDTVN 120 IMQPSYEQAS HGNFPPSISL SQTSGAVPQY VANNAATAEL VGRTRQHHAV LEGFPSLTDA 180 DMIMYVSQYM PEVLVDSGMK MMNDSFQYNP QPVNATEVAP RKVSSMLVCS GKIVPVMPVN 240 PPVKPMGHSN SLVNTLVKAD SNTSVATATA ASNTVSNTRG SDGLALAAPV PETHSVPVRK 300 PRVVHPKAGQ PKPSKRAVAG GKRQLATATA MSATSTEDAA TSSHQGVDKS KGKRAATSSS 360 LSNDDDDDAD KDDDDDVGDH GTSTAFWKVK RARKTGGGSK QAVAAAAGPR APKTTVATST 420 YKGVTRHRWT GKWEAHLWDA TAPRKTKGSG GRTRGRQVYL GGYETEEAAS HAYDRAALVY 480 WGVAATINHP IEDYSSELPH LLASTREDAV AALRRGSSGF SRGASRYRGV TRHHQHGKWE 540 ARIGRVANNR YQYLGTFNSE EEAARAYDKA ALSYRGSKAV TNFPASDYAA HLATAACALA 600 MCKSLMASKS AEASAGAVAA SASTEDTATD RPPATGNAAV QAATVTSRHT AAVHDSDTLV 660 MNEETGGCQQ LRARSTRGAK TAATKRMKEA ARQLSRCEFE DDDTCAGGLD NIQTTNTAEV 720 NGVGMFVANV DIADVDKFAY STGLLPAFEA SDMMMSDKHT MGGHDVLVCT AQDSAAMAAM 780 LGHQDDVVLL DVNQSYTLGA MLEPMGLYI*

Sequence ? help Back to Top

Protein Sequence Length: 810 aa Download sequence

MPHQHANSTS SVHDVTSMAG VPTASYMVPL SALSPPSQHT ITHHTSTVHQ PHGQLSALQP  60
VMCHPIPTYG QLLPVSYDRP SSVNSTSNQD PPTTPIHNVP ANTMTAQSFG LYPNQFDTVN  120
IMQPSYEQAS HGNFPPSISL SQTSGAVPQY VANNAATAEL VGRTRQHHAV LEGFPSLTDA  180
DMIMYVSQYM PEVLVDSGMK MMNDSFQYNP QPVNATEVAP RKVSSMLVCS GKIVPVMPVN  240
PPVKPMGHSN SLVNTLVKAD SNTSVATATA ASNTVSNTRG SDGLALAAPV PETHSVPVRK  300
PRVVHPKAGQ PKPSKRAVAG GKRQLATATA MSATSTEDAA TSSHQGVDKS KGKRAATSSS  360
LSNDDDDDAD KDDDDDVGDH GTSTAFWKVK RARKTGGGSK QAVAAAAGPR APKTTVATST  420
YKGVTRHRWT GKWEAHLWDA TAPRKTKGSG GRTRGRQVYL GGYETEEAAS HAYDRAALVY  480
WGVAATINHP IEDYSSELPH LLASTREDAV AALRRGSSGF SRGASRYRGV TRHHQHGKWE  540
ARIGRVANNR YQYLGTFNSE EEAARAYDKA ALSYRGSKAV TNFPASDYAA HLATAACALA  600
MCKSLMASKS AEASAGAVAA SASTEDTATD RPPATGNAAV QAATVTSRHT AAVHDSDTLV  660
MNEETGGCQQ LRARSTRGAK TAATKRMKEA ARQLSRCEFE DDDTCAGGLD NIQTTNTAEV  720
NGVGMFVANV DIADVDKFAY STGLLPAFEA SDMMMSDKHT MGGHDVLVCT AQDSAAMAAM  780
LGHQDDVVLL DVNQSYTLGA MLEPMGLYI*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	2e-50	AP2 family protein