PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY69425.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 179aa MW: 20345.8 Da PI: 6.7316 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 57.2 | 2.1e-18 | 2 | 48 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k+ien+ r +tfskRr gi KKA+EL +L++ae+ +++fs++gk + GAY69425.1 2 KKIENEDDRMITFSKRRSGIYKKASELVTLTGAEIGIVVFSPSGKPF 48 68******************************************955 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence |
MKKIENEDDR MITFSKRRSG IYKKASELVT LTGAEIGIVV FSPSGKPFSF GHPSLEAVAN 60 RFLGSSQEHP NDNTHPLVEA HRRVRINELN QQHNELLRQV DEEKAREKIL KQNRKGRETQ 120 PHWWETPVDE LNHQELLQMD AAIDDLHKTF LAKLNEKTAA ASSSMALPIK SDEATSPND |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-40 | M-type_MADS family protein |