PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY68151.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 254aa MW: 29524.8 Da PI: 9.4285 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.1 | 5.3e-07 | 100 | 119 | 3 | 22 |
S---SGGGGTS--TTTTT-S CS zf-CCCH 3 telCrffartGtCkyGdrCk 22 + C+f+++tG C++G rC+ GAY68151.1 100 KAYCPFHLKTGACRFGQRCS 119 578****************6 PP | |||||||
2 | zf-CCCH | 22.3 | 2.3e-07 | 183 | 209 | 1 | 25 |
--S---SGGGGTS..--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaH 25 +k ++C ++++ tC++G C+F+H GAY68151.1 183 WKIAICGEYMKSRlkTCSRGMACNFIH 209 7889*********************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence |
MAGRSYDMFS EHREFRGEKR MNVIRMMIEN MLKKGLQKLY GKEMRLLSGR KRVPKKDANP 60 LSKKEDVDRP TSNPLPPQSE AFADHQNAQQ ALETVAQQDK AYCPFHLKTG ACRFGQRCSI 120 VHFYPDKSCT LLIKNMYNGL GLAWEQDERL ESLESAVLAY HSVNGRYFTG KQITCEFINV 180 TRWKIAICGE YMKSRLKTCS RGMACNFIHY FRNPSGDYEW ADWDKPPPRY WVKKMAALFG 240 YSDESGTWNQ ERLG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 1e-100 | C3H family protein |