PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY65443.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 265aa MW: 30697.3 Da PI: 8.7724 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.4 | 1.2e-05 | 42 | 65 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg++F +++ L++H + H GAY65443.1 42 YVCGVCGRRFYNHDKLVNHFMQvH 65 9******************77655 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence |
MVAYTNSHAF NYVPQVVREQ REDKKLFDQL ENKGAIRPAE PYVCGVCGRR FYNHDKLVNH 60 FMQVHEREEK KRLNEIETAR GKRRVHLVGK CSVKMEKYKR TVKAILTPKV GSGSADELKR 120 EGFWVRTMFD KPQAADVLLR NHMVDMMDKR TIECLVVLSD NSDFVEVLLE ANLRHLKTVV 180 VKDINDGALN RISVACFSWW DKLMGKARKE AISVVGKRKD RDVLKRLEWT YDPEMEKKAL 240 DWDDGSKDAD VDDITHASDA DCIQK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12240.1 | 1e-104 | C2H2 family protein |