PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY63840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | LBD | ||||||||
Protein Properties | Length: 216aa MW: 23830.9 Da PI: 7.9144 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.8 | 2e-39 | 13 | 114 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p +r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l ++k GAY63840.1 13 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVK 111 7*************************99********************************************************************999 PP DUF260 99 eel 101 ++l GAY63840.1 112 AQL 114 875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence |
MASSGSAAGT GSPCGACKFL RRKCASDCIF APYFCSEQGP ARFAAIHKVF GASNVSKLLL 60 HVPVADRCEA VVTIAYEAQA RIRDPVYGCV AHIFALQQQV ACLQAQLMQV KAQLAHNMMD 120 TRSIENHHQW QGNCTITGVP SFPSSYPGNY ANPISPQSSL ESAYCHNNDG MNNMQEIESR 180 SDEFSFQGYP HNYRKRPYNN TDLGELQALA LRMMRN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 1e-64 | LBD family protein |