PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY60920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | TCP | ||||||||
Protein Properties | Length: 213aa MW: 22631.3 Da PI: 10.5936 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.1 | 3.7e-35 | 43 | 122 | 6 | 66 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................s 66 ++++++hTkv+gR+RRvR++ +caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt s GAY60920.1 43 SSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTgtvpavavssstagptpmsS 122 689*********************************************************44444433333333333322 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence |
MASEMALQTH QNPNPNSVTP TTTESAAKTE LAHPRKRSGS SSSSTKDRHT KVNGRGRRVR 60 MPPLCAARIF QLTRELGHRS DGETIEWLLR QAEPSIIAAT GTGTVPAVAV SSSTAGPTPM 120 SSSPPSLSCC VQPLSVSSQG MFLAACAGRQ PNLPFSTCAS RWGCSSREMG TATYRSQRCY 180 CSRQLRAAGR RGGGGGREWG ARGYQGDWGS SLD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47620.1 | 6e-29 | TCP family protein |