PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY59319.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 261aa MW: 29166.1 Da PI: 8.8373 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.3 | 1.5e-16 | 19 | 51 | 11 | 43 |
HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsst 43 tf kR+n ++KKA+E +LCd+ev++ii++++ GAY59319.1 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPK 51 59*****************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence |
MACQALKLEP TKQEKACLAT FKKRKNSLMK KAYEFTTLCD VEVCIIIYGP KVKGHSLKPE 60 TWTSKEGELT SIIRKYEKKI SAVDHGQHRT LSLSKFDESK MRQVDDAATR ACKKICVGDF 120 TTWDQGMDSL SEDQLKMILS TMDDKLKDVD RKLNTIKRDQ NVVNKATSRK LEHDHSNDAK 180 SLVNLQPAYQ VSQKLPSDSS FMEIQCGGGS GSTIPFTPLQ GQINWNSSLT MSPTSSGIYD 240 GSAAQAKKSN DIRKDQSSQE E |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58890.1 | 1e-17 | M-type_MADS family protein |