PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY58849.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27463.2 Da    PI: 9.6822
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY58849.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.92.4e-273787151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+i+n + rqvtfskRr g++KKA+ELS+LCdaeva+i+fs+tg+l++yss
  GAY58849.1 37 KKIDNPTARQVTFSKRRRGLFKKAQELSTLCDAEVALIVFSTTGRLFDYSS 87
                68***********************************************96 PP
2K-box51.54.2e-181131971397
       K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                 + +  +  +a L ke+    re+R+++Ge+L++L+++eL++Le+ Le +l+++ ++K e ll++i+ l++ke +l een +L++ 
  GAY58849.1 113 QLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQH 197
                 56667778899999999999************************************************************99985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MERYSTAPKT TPLKEKNQAQ VLVDFLGKMT RQKIEIKKID NPTARQVTFS KRRRGLFKKA  60
QELSTLCDAE VALIVFSTTG RLFDYSSSSM KQVIDRHNLH SQNLHKFDQP SLQLQLESST  120
YAILSKEMAD RTRELRQMKG EELQELNMEE LMRLEKSLEG GLSRVVQTKG ERLLNEIDAL  180
RRKEAQLTEE NLRLKQHETG INTNVQGHSF NTFICSSSGD NSQDRESSNT SLKLGLPFPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-71MIKC_MADS family protein