PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY58712.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 376aa MW: 41435.6 Da PI: 8.532

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY58712.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.4	3.1e-07	204	226	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H GAY58712.1 204 HYCQVCGKGFKRDANLRMHMRAH 226 68*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MIFSGVGAAS CFPNMSQAVV SSSGPASNPS NVSSLLYSVS FLKQKVHQLQ SVITILVSQD 60 HHQPTESTSI ALANMRSLVQ EIILTASSLM VTCQQMSPPP ASTSGTNNIT TNEISQLDLN 120 NNQEISSGLQ GCYNFSEAFD TWYGDHNDLV TTDDDNNRGM HSNNVSNYIN NANIPVAENG 180 ESFSEINGDI IEVDAVDLLA KYTHYCQVCG KGFKRDANLR MHMRAHGDEY KTSAALTNPL 240 KKNGSSMGNN NESTIKIVRK YSCPQEGCRW NKKHAKFQPL KSMICVKNHY KRSHCPKMYV 300 CKRCNRKQFS VLSDLRTHEK HCGDSKWQCS CGTTFSRKDK LMGHVALFVG HTPAVNVNST 360 NTYGQKGAST GTNVIR

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MIFSGVGAAS CFPNMSQAVV SSSGPASNPS NVSSLLYSVS FLKQKVHQLQ SVITILVSQD  60
HHQPTESTSI ALANMRSLVQ EIILTASSLM VTCQQMSPPP ASTSGTNNIT TNEISQLDLN  120
NNQEISSGLQ GCYNFSEAFD TWYGDHNDLV TTDDDNNRGM HSNNVSNYIN NANIPVAENG  180
ESFSEINGDI IEVDAVDLLA KYTHYCQVCG KGFKRDANLR MHMRAHGDEY KTSAALTNPL  240
KKNGSSMGNN NESTIKIVRK YSCPQEGCRW NKKHAKFQPL KSMICVKNHY KRSHCPKMYV  300
CKRCNRKQFS VLSDLRTHEK HCGDSKWQCS CGTTFSRKDK LMGHVALFVG HTPAVNVNST  360
NTYGQKGAST GTNVIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	1e-106	C2H2 family protein