PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY58471.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 887aa MW: 98158.3 Da PI: 9.0504

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY58471.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.6	1.7e-06	188	208	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 lC++fa+ G C++G+ C+F+H GAY58471.1 188 LCKDFAA-GKCRRGSHCHFSHH 208 9****.***********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 887 aa Download sequence
MSGTRRKHNS KWDLKEESQL SHEKVRDSAR PGKAGISFYE RESRSGRFSP RAAGYNSGHN 60 WSAREADDIQ SSRHDMQFSS REPLPGSRSS RKDDRIDDYR ENFKATATWD ADGNYDMKMS 120 PGLDDWRQQI RRRSPRKDWN GHRRSRSRSR SRSRSRSWNR SRSPVRELRR ESGVYGRNRG 180 RPGVSAQLCK DFAAGKCRRG SHCHFSHHSS QSYEDNWDSR HKQAGAPRFS TPHESREYPI 240 RSGRNREGSL EIVDIPCKFF AAGNCRNGKY CKFFHSSQAL ASPVRRSRDD SLVRGQNSDE 300 REKLWHGSKW TDATTISDAA RLSEDKNERM GAKKSRDDGL VRNHNSDDVE KLWNGSTWNG 360 TDISTDAAKL SENQNVGMGA PGPRFSGWST DDRLPHTLDE NATHSKITAV TLGGDEINKM 420 EASQGSIKIA GAVMGAPESG GTENWLGDME MSPEWNYPVK PCSRVMNEDH GQITRSSQSL 480 PICDTSVLHE QGIIQETSGL LCDEAATMEP MMDKSYLKRD INQRDVGGVR LPGADKVAIG 540 ETAIPHIDLN FSANVLPTQG LEQNGQSSSA LPFLNLNSIG QSQGAINSES SRGGNINNPQ 600 NHAVFQVEKS INKPGTGDGS ALQFSSAIQP TQNMVSSEQL TQLTNLSASL VQILGNGQQL 660 PQLYAALNSH NVMQVPSSVK SEGPIAPDSA VASQTSEAIR SQNQNQSQYD PLSDSIDPKQ 720 LELVSPPGFS VNPSGQKSNA DGKPNGGLEN HKVSEINGEV EAEEGRKAQA ENKVPQENGE 780 VQKTDGDDKD DKADEGKKSK DTKGLRAFKF ALAEFVKELL KPTWKEGQIN KDAYKNIVKK 840 VVDKVIGTMQ GAANIPQTQE KIDQYLSFSK SKLTKLVQAY VEKSRKG

Sequence ? help Back to Top

Protein Sequence Length: 887 aa Download sequence

MSGTRRKHNS KWDLKEESQL SHEKVRDSAR PGKAGISFYE RESRSGRFSP RAAGYNSGHN  60
WSAREADDIQ SSRHDMQFSS REPLPGSRSS RKDDRIDDYR ENFKATATWD ADGNYDMKMS  120
PGLDDWRQQI RRRSPRKDWN GHRRSRSRSR SRSRSRSWNR SRSPVRELRR ESGVYGRNRG  180
RPGVSAQLCK DFAAGKCRRG SHCHFSHHSS QSYEDNWDSR HKQAGAPRFS TPHESREYPI  240
RSGRNREGSL EIVDIPCKFF AAGNCRNGKY CKFFHSSQAL ASPVRRSRDD SLVRGQNSDE  300
REKLWHGSKW TDATTISDAA RLSEDKNERM GAKKSRDDGL VRNHNSDDVE KLWNGSTWNG  360
TDISTDAAKL SENQNVGMGA PGPRFSGWST DDRLPHTLDE NATHSKITAV TLGGDEINKM  420
EASQGSIKIA GAVMGAPESG GTENWLGDME MSPEWNYPVK PCSRVMNEDH GQITRSSQSL  480
PICDTSVLHE QGIIQETSGL LCDEAATMEP MMDKSYLKRD INQRDVGGVR LPGADKVAIG  540
ETAIPHIDLN FSANVLPTQG LEQNGQSSSA LPFLNLNSIG QSQGAINSES SRGGNINNPQ  600
NHAVFQVEKS INKPGTGDGS ALQFSSAIQP TQNMVSSEQL TQLTNLSASL VQILGNGQQL  660
PQLYAALNSH NVMQVPSSVK SEGPIAPDSA VASQTSEAIR SQNQNQSQYD PLSDSIDPKQ  720
LELVSPPGFS VNPSGQKSNA DGKPNGGLEN HKVSEINGEV EAEEGRKAQA ENKVPQENGE  780
VQKTDGDDKD DKADEGKKSK DTKGLRAFKF ALAEFVKELL KPTWKEGQIN KDAYKNIVKK  840
VVDKVIGTMQ GAANIPQTQE KIDQYLSFSK SKLTKLVQAY VEKSRKG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	152	RSRSRSRSR
2	144	154	RSRSRSRSRSR
3	146	154	RSRSRSRSR
4	146	156	RSRSRSRSRSR
5	148	156	RSRSRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-13	C3H family protein