PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY58402.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 722aa MW: 85024.8 Da PI: 7.7889

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY58402.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.5e-07	240	267	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++ tC++G C+F+H+ GAY58402.1 240 WKIAICGEYMKSRlkTCSRGMACNFIHC 267 7889***********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence
MEESESNRVA EAVNEAKMSR KEKKKMAKKK RRKDKRKEMA ANEREEEEAR SKDPEERRKF 60 EMMIKEEEEK RERALKEFEE RERLWIQEME LKKKKVEEEE EERRKVMEDR EKEEAAMKQL 120 LVEKENECDE DDDWEYVEEG PAEIIWQGNE IIIRKKKDVD RPTSNPFPPQ SEAFADHQNA 180 QQALETVAQQ VCRNGSSHLR GNVYVHYKSL ESAVLAYRSV NGRYFAGKQI TCEFINVTRW 240 KIAICGEYMK SRLKTCSRGM ACNFIHCFHN PGGDYEWADW DKPPPRYWVK KMAALFGYSD 300 ESGTWNQERS GQTRNKIDST NADRHHYRRS RSREADRVKS GSSRSHDDER QVHETTWSRR 360 RSNYHSESRS DEANSDGSWS DRDRDKDRDK HHGHTVKRIK HGSSMSEKST DLLDTRDRTK 420 EADSDGNWPD GQRDAETCHV HIRKSSRYRS RREMPNNSKN RTHVADRGQQ DRCRDEERER 480 RHLRKRSRDR STVGYPDNHG DSCKGDDAGS IKDLSDEGII ADRHLSHKKR SSYHQGNISK 540 YLDEDGCGEY RSYYTDSGDD WLERDKERHH AYKRRCSRHQ TEDTEFLDDE GEPINKSKKN 600 RHHGESACDK SDPRRNTTHK HSSRRSHSRK DKSRADHKSS SSGRSDERCG SIGDQDRWRP 660 IDAEEDGKSI RHVTSVQSYE SDSPGRYSGG KSRDFDSEYY DSEKIDDDRQ IEKQIRTIST 720 TS

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence

MEESESNRVA EAVNEAKMSR KEKKKMAKKK RRKDKRKEMA ANEREEEEAR SKDPEERRKF  60
EMMIKEEEEK RERALKEFEE RERLWIQEME LKKKKVEEEE EERRKVMEDR EKEEAAMKQL  120
LVEKENECDE DDDWEYVEEG PAEIIWQGNE IIIRKKKDVD RPTSNPFPPQ SEAFADHQNA  180
QQALETVAQQ VCRNGSSHLR GNVYVHYKSL ESAVLAYRSV NGRYFAGKQI TCEFINVTRW  240
KIAICGEYMK SRLKTCSRGM ACNFIHCFHN PGGDYEWADW DKPPPRYWVK KMAALFGYSD  300
ESGTWNQERS GQTRNKIDST NADRHHYRRS RSREADRVKS GSSRSHDDER QVHETTWSRR  360
RSNYHSESRS DEANSDGSWS DRDRDKDRDK HHGHTVKRIK HGSSMSEKST DLLDTRDRTK  420
EADSDGNWPD GQRDAETCHV HIRKSSRYRS RREMPNNSKN RTHVADRGQQ DRCRDEERER  480
RHLRKRSRDR STVGYPDNHG DSCKGDDAGS IKDLSDEGII ADRHLSHKKR SSYHQGNISK  540
YLDEDGCGEY RSYYTDSGDD WLERDKERHH AYKRRCSRHQ TEDTEFLDDE GEPINKSKKN  600
RHHGESACDK SDPRRNTTHK HSSRRSHSRK DKSRADHKSS SSGRSDERCG SIGDQDRWRP  660
IDAEEDGKSI RHVTSVQSYE SDSPGRYSGG KSRDFDSEYY DSEKIDDDRQ IEKQIRTIST  720
TS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	32	KKKRR
2	28	33	KKKRRK
3	28	36	KKKRRKDKR
4	29	33	KKRRK
5	31	37	RRKDKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	4e-67	C3H family protein