PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY56744.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

RAV

Protein Properties

Length: 358aa MW: 41111.4 Da PI: 6.1292

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY56744.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	30.4	1e-09	43	90	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 s++kGV ++g W A+I+ + +r++lg+f ++++Aa a++ a+ +l+ GAY56744.1 43 SKFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEKDAAMAYDSAAIRLR 90 799*6.666899999......44******99*********998 PP
2	B3	89.5	2.6e-28	166	262	1	85
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ltpsdv+k++rlv+pkk+a ++ +++k+ +++l++ d+s + W+++++y+k+s+++v+t+GW++Fvk+n+Lk++D++ F+l GAY56744.1 166 FQKELTPSDVGKLNRLVIPKKYAVKYfpqiserveehaENDKADDVQLVFHDKSMKLWKFRYCYWKSSQSFVFTRGWNRFVKENQLKANDTICFYLC 262 99******************************999988899**************************************************75 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MEEEMLSIVS NGETNVIPEL SDSISSTPLI PATKRLRHTS AVSKFKGVVP QQNGHWGAQI 60 YANHQRIWLG TFKSEKDAAM AYDSAAIRLR SVDSHRNFPW TKITIEEPNF QSHYSTEAVI 120 NMIRDGSYSS RFADFLRSHS RTLEEDVIFT QMRAGTDGWM MCRQLFQKEL TPSDVGKLNR 180 LVIPKKYAVK YFPQISERVE EHAENDKADD VQLVFHDKSM KLWKFRYCYW KSSQSFVFTR 240 GWNRFVKENQ LKANDTICFY LCELRDITKG TKTFCMIDAN KGENSGASAE VSGPYVDMKV 300 DLQLQLGQNI VDDKKENKVE EDDNGNEIEA TEEVELKAPS STSDSERKLF KLFGVEIF

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MEEEMLSIVS NGETNVIPEL SDSISSTPLI PATKRLRHTS AVSKFKGVVP QQNGHWGAQI  60
YANHQRIWLG TFKSEKDAAM AYDSAAIRLR SVDSHRNFPW TKITIEEPNF QSHYSTEAVI  120
NMIRDGSYSS RFADFLRSHS RTLEEDVIFT QMRAGTDGWM MCRQLFQKEL TPSDVGKLNR  180
LVIPKKYAVK YFPQISERVE EHAENDKADD VQLVFHDKSM KLWKFRYCYW KSSQSFVFTR  240
GWNRFVKENQ LKANDTICFY LCELRDITKG TKTFCMIDAN KGENSGASAE VSGPYVDMKV  300
DLQLQLGQNI VDDKKENKVE EDDNGNEIEA TEEVELKAPS STSDSERKLF KLFGVEIF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	1e-106	RAV family protein