PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY55622.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | LBD | ||||||||
Protein Properties | Length: 167aa MW: 19106.4 Da PI: 9.7405 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 113.1 | 1.9e-35 | 18 | 116 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++r+kC++dC la+yfpa+++k+f++vhk+FG+snv+k+++++++ee r+++++sl++eA +r++dPv+G +g ++++ ++l+ ++++ +++ GAY55622.1 18 ACAACKHQRKKCSEDCKLARYFPANRSKEFQAVHKVFGVSNVTKIVQNANDEEsRQKVVDSLIWEAFWRQKDPVSGPYGEYQRICEELKLYRSQTLMQN 116 7************************************************77776**********************************99998876655 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence |
MMQRNNNNSS TTSSVQSACA ACKHQRKKCS EDCKLARYFP ANRSKEFQAV HKVFGVSNVT 60 KIVQNANDEE SRQKVVDSLI WEAFWRQKDP VSGPYGEYQR ICEELKLYRS QTLMQNHNHR 120 NQNHQLVQLP GQGGMIYRSS SQPLMGWNNG MNTNNGISVN LVEQVAR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 2e-44 | LBD family protein |