PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY55424.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 360aa    MW: 42235.9 Da    PI: 8.8316
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY55424.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.2e-06142158622
                 -SGGGGTS--TTTTT-S CS
     zf-CCCH   6 CrffartGtCkyGdrCk 22 
                 C+f+++tG C++G rC+
  GAY55424.1 142 CPFHLKTGACRFGQRCS 158
                 ****************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    
MDKSYRIQNT TFQLPLQNLD TYPPIRRWGR RELATYPPLA HQLRRVLRAS RIWRRKENEC  60
DEDDDWEYVE EGPTEIIWQG NEIIIRMKKV RVLKKDANPL SKKEDVDRPT SNPLPPQSEA  120
FADHQNAQQE LETVAQQDKV HCPFHLKTGA CRFGQRCSRV YFYPDKSCTL LIKNMHNGPG  180
LAWEQDEGLE VCRNGFSHLR GNIYVHYKSL ESAVLAYHSI NGRYFAGKQT CSRGMARNFI  240
HCFRNPGGDY EWADLDKPPP RYWVKKMAAL FGYSDESGTW NQERSGQTRN KIDSTNADRH  300
HYRRSRLREA DRVKSGSGRS HDDERQVHET TWSRRRSNYH SESRSDEANS DGSWSDRDRD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-109C3H family protein