PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY53936.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

WRKY

Protein Properties

Length: 309aa MW: 35001.6 Da PI: 6.4338

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY53936.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	81.1	1.1e-25	135	195	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqKe+ ++++prsY+rCt++ gC+++k+v+r ++dp++ ++tY g+H+++ GAY53936.1 135 NDGHAWRKYGQKEILNTKHPRSYFRCTHKyvqGCRATKQVQRRDDDPQMYDTTYIGHHTCR 195 8*************************9999************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence
MGTLCSEKTS REKMAKELVK GKKFAHQLQV LLQKPFEEDG LVSAEDLVVK ILRSFTQTLS 60 VLGTTVTTSC DDDHEKYQQQ QANSCNVNSD DYRRRSEDSG ESKKRPAAKD SVSKRGCYKR 120 KKNSQTWTVV SSTSNDGHAW RKYGQKEILN TKHPRSYFRC THKYVQGCRA TKQVQRRDDD 180 PQMYDTTYIG HHTCRDIISF PQIVAESSEP NWGSTISTGG SFVVSSSSSI PTEEIKQECK 240 EETTSTDHQD LSSLDSIAWE DFVSFQSSDE PEAAAMVFSC NNNKMISSHS LDMYNDFEHG 300 FHFDDSGIF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	122	KKRPAAKDSVSKRGCYKRKK
2	119	146	KRKKNSQTWTVVSSTSNDGHAWRKYGQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	4e-46	WRKY family protein