PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY52454.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 309aa    MW: 35782 Da    PI: 9.6559
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY52454.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.5e-1611101198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 ffkv +p +   ++ l++p kf++++g++   s + tl  ++gr W+v+l  ++  g++++ +GW +F+k   + +g + +Fk+ ++s+f  +v +f+
  GAY52454.1  11 FFKVILPLSLEHKK-LRIPPKFVRDFGHE--LSEDATLAVPNGRPWRVRL--KRDEGGVWFDDGWYDFAKYYSVSAGYISIFKYGKNSNF--RVLIFD 101
                 78888888877776.***********966..8899***************..********************************998999..888876 PP
2B3421.7e-13218300590
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  +ps++ +++r+++p +fa+++ +  ++s+++++ +e+ + +++++++r ++ ++ l+    e v++ +LkegD+++F+l++++ +
  GAY52454.1 218 ILPSSSITHNRVYVPATFAKHFASRDAKSMEVRVSNERHKFMNMNVCWRENG-GFALS--MTELVEDENLKEGDIFIFELISKRVA 300
                 5699***************88888899*******************877765.66666..89*****************9976555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
NKSMAYRPPQ FFKVILPLSL EHKKLRIPPK FVRDFGHELS EDATLAVPNG RPWRVRLKRD  60
EGGVWFDDGW YDFAKYYSVS AGYISIFKYG KNSNFRVLIF DFTACEINYK REEGSKLDKR  120
SRQSAANYSF ENFKAKHKYR ECEPQIKKCR KEELVEKNES DDGGGGGGGD IEYNLWDLLT  180
EMGICISKKH RAFSTVESKR VLKIARSLNL KYPTSLIILP SSSITHNRVY VPATFAKHFA  240
SRDAKSMEVR VSNERHKFMN MNVCWRENGG FALSMTELVE DENLKEGDIF IFELISKRVA  300
VLNLSIYHL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.15e-29B3 family protein