PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY50898.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 317aa    MW: 35606.6 Da    PI: 7.1117
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY50898.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.87.9e-131462255
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                r+  n+ E+ RR ++++ +++L +l+P++      Kls  eiL +A+ YI +Lq
  GAY50898.1 14 RAQRNIKEQHRRMHMKDLISQLASLIPSN-----SKLSMPEILDEATSYITHLQ 62
                8889************************8.....7******************9 PP
2HLH38.42.2e-12167215255
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r+  n+ E+ RR ++++ +++L +++P +      Kls  +iL +A+ YI +Lq
  GAY50898.1 167 RAQRNIKEKHRRMHMKDLISQLASVIPCN-----SKLSMPQILDEATSYIMHLQ 215
                 8889************************8.....7******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MAEENSSAAG SSSRAQRNIK EQHRRMHMKD LISQLASLIP SNSKLSMPEI LDEATSYITH  60
LQKNKESLER RRALLKEEDH SEPTVMNITT SGSTLEVNLI CGSNRNFMFH EIISVLEEGA  120
AEIINVTQFN SGDRVIFSVL SKVAHLYYLN PKNMVGENCS AAGSSSRAQR NIKEKHRRMH  180
MKDLISQLAS VIPCNSKLSM PQILDEATSY IMHLQKNKES LERKKALLKG DDHPEPTVMN  240
ISTSGSTLEV NLICGLNRNF MFHEIISVLE EEGAEVINVT QFNSGDRVIF SVQSKAINSR  300
IGVETERVQE RLKDLIL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.12e-33bHLH family protein