PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY50580.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 338aa    MW: 37824.3 Da    PI: 7.611
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY50580.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.7e-0891116127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +kt+lC  f   G C+ G++C+FaHg+
  GAY50580.1  91 FKTRLCAKFKH-GACRNGENCNFAHGM 116
                 69*******99.*************95 PP
2zf-CCCH29.71.1e-09154177225
                 -S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                 k++lC+ f+ + +C+yGdrC+F H
  GAY50580.1 154 KMKLCKKFYNGEECPYGDRCNFLH 177
                 789*******66************ PP
3zf-CCCH36.48.5e-12230255127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +kt+lC  + + G+C++G++C+FaHg+
  GAY50580.1 230 WKTKLCIKWTQ-GQCPFGEKCHFAHGQ 255
                 8**********.*************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MSFPNSSSPF LAQELQSYSA GSDAIGVWPQ FSMSDEQQYD RLSQYDQQPP FKRPRNYEDN  60
ESNSATYPPM NPRMNPSMNL PINKGITNIF FKTRLCAKFK HGACRNGENC NFAHGMEDLR  120
QPPPNWQELV GGGRAEEDRS SGGNWDDDQK IIHKMKLCKK FYNGEECPYG DRCNFLHEDP  180
AKFRDDSGRY RESSAISIGT TGPPVVTGSC SNQAEGNRPV GSNCVKPVYW KTKLCIKWTQ  240
GQCPFGEKCH FAHGQSELQV IGGRTEGEAG NPSFISVKPQ LVPANDSSPT AVLPTLNKEG  300
QGKQCLFKWK GPKKINRIYA DWLDDMPLAH NLPSQVES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.17e-99C3H family protein