PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY50169.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 294aa MW: 31870.8 Da PI: 7.3357

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY50169.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.2	1.2e-12	133	158	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ C+F+H++ GAY50169.1 133 DQPECQFYMKTGDCKFGAVCRFHHPR 158 689*********************96 PP
2	zf-CCCH	40.2	5.5e-13	204	229	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++lC f++r+G+Ck+G++CkF H++ GAY50169.1 204 GEPLCIFYSRYGICKFGPSCKFDHPM 229 689*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence
MMVSLRGSPV YPTVQSPTTP SQQSYAGGIT NWSRASFIPS PRWQGPSSYA PMLLPQGMVS 60 VPGWNTYSGQ LGSVSSSENL QQTSGNSQIY GASRQTEPSN SGSQGTMSPF RSGSIPVGFY 120 ALQRESVFPE RPDQPECQFY MKTGDCKFGA VCRFHHPRER LLPVPDCVLS PIGLPLRPVK 180 RTFTVYAEDA TETLNLIISH AFMGEPLCIF YSRYGICKFG PSCKFDHPMG IFTYNLSASS 240 SADAPVRRFL GSSSATGALN LSSEGLVEAG SGRRLSLPET RQMSSGDDEI DTEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	3e-79	C3H family protein