PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY50168.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 307aa MW: 33189.4 Da PI: 6.8886

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY50168.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.1	1.2e-12	133	158	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ C+F+H++ GAY50168.1 133 DQPECQFYMKTGDCKFGAVCRFHHPR 158 689*********************96 PP
2	zf-CCCH	40.1	5.9e-13	217	242	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++lC f++r+G+Ck+G++CkF H++ GAY50168.1 217 GEPLCIFYSRYGICKFGPSCKFDHPM 242 689*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence
MMVSLRGSPV YPTVQSPTTP SQQSYAGGIT NWSRASFIPS PRWQGPSSYA PMLLPQGMVS 60 VPGWNTYSGQ LGSVSSSENL QQTSGNSQIY GASRQTEPSN SGSQGTMSPF RSGSIPVGFY 120 ALQRESVFPE RPDQPECQFY MKTGDCKFGA VCRFHHPRER LLPVPDCVLS PIGLPLRPPK 180 LLAYAMGLLS GTERTFTVYA EDATETLNLI ISHAFMGEPL CIFYSRYGIC KFGPSCKFDH 240 PMGIFTYNLS ASSSADAPVR RFLGSSSATG ALNLSSEGLV EAGSGRRLSL PETRQMSSGD 300 DEIDTEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	3e-77	C3H family protein