PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY49688.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 376aa MW: 43306.2 Da PI: 5.445

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY49688.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.7	1.4e-33	5	133	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 +GfrF Ptde+++ k+ + +++ ++ike+d+y++ePw+Lp +++++ee+ wyfF++ k+a++kr +r tk+gyWk+tg+ ++++k k+e GAY49688.1 5 VGFRFYPTDEQIILLLTMKRRDPAGFSV-RTIKEIDLYSFEPWELPchSEIQSEEEVWYFFCEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKyKTE 102 7**********544444444445777.78***********6448888999*********************************998899 PP NAM 99 lvglkktLvfykg.rapkgektdWvmheyrl 128 ++g+kk+L f + a + kt+Wv+he ++ GAY49688.1 103 VIGTKKILSFSRDdAAAEKDKTEWVIHEIAV 133 9******764677889******875 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MDSLVGFRFY PTDEQIILLL TMKRRDPAGF SVRTIKEIDL YSFEPWELPC HSEIQSEEEV 60 WYFFCEPCYK NAESKRVRRR TKEGYWKKTG RGSNIKRKYK TEVIGTKKIL SFSRDDAAAE 120 KDKTEWVIHE IAVENSPDFE KDFVVCRLER KREKKTLGVV STKRKREKKT LGVVSTKRKR 180 EKKLGVSTSD GDQSCQNLTF KKSHVAEDTN RNHVAEKVDL VSIAGNIVLV PELQVRDHSI 240 SYYRNHVAEK IVEDSVEAET RRLAELNRRG DGYDARNDAS VWALQSSDYP EQESSDYNGS 300 SYGSGLLNSQ LDGEQVVGQF NSRRDFQTEY SPEETVETTP DFFTSKSDEG VYMEGGSDAN 360 TGTESFIEWI DVLFDY

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MDSLVGFRFY PTDEQIILLL TMKRRDPAGF SVRTIKEIDL YSFEPWELPC HSEIQSEEEV  60
WYFFCEPCYK NAESKRVRRR TKEGYWKKTG RGSNIKRKYK TEVIGTKKIL SFSRDDAAAE  120
KDKTEWVIHE IAVENSPDFE KDFVVCRLER KREKKTLGVV STKRKREKKT LGVVSTKRKR  180
EKKLGVSTSD GDQSCQNLTF KKSHVAEDTN RNHVAEKVDL VSIAGNIVLV PELQVRDHSI  240
SYYRNHVAEK IVEDSVEAET RRLAELNRRG DGYDARNDAS VWALQSSDYP EQESSDYNGS  300
SYGSGLLNSQ LDGEQVVGQF NSRRDFQTEY SPEETVETTP DFFTSKSDEG VYMEGGSDAN  360
TGTESFIEWI DVLFDY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	166	RKREKKTLGVVSTKRKR
2	163	183	KRKREKKTLGVVSTKRKREKK
3	163	179	RKREKKTLGVVSTKRKR
4	164	180	RKREKKTLGVVSTKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22290.1	2e-27	NAC family protein