PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY49682.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 548aa MW: 60858.1 Da PI: 4.3701

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY49682.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	92	9.7e-29	5	135	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya....tgkrknratksgyWkatgkdkevlsk 95 G+ F+P dee++ + Lkkk + ++ ++ike+d y+++Pw+Lp ++++++e+ wyfF+k + k a +g++++r+tksg+Wk tg e+++k GAY49682.1 5 TGIGFRPLDEEII-DLLKKKRLDPGSSV-QTIKEIDFYSFDPWELPglSEIQSTEDVWYFFCKPKYKGAkrkrSGQQRHRKTKSGTWKMTGGGSEIKRK 101 699********.89999999998888.78***********6448888899**9987766333367788999************99 PP NAM 96 .kgelvglkktLvfykg.rapkgektdWvmheyr 127 ++e++g k+ Lvf + a++ +t+W+mhe + GAY49682.1 102 nSTEVIGDKDYLVFIHDdAASEKANTKWLMHEIA 135 66778*****9653677788******76 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MGSLTGIGFR PLDEEIIDLL KKKRLDPGSS VQTIKEIDFY SFDPWELPGL SEIQSTEDVW 60 YFFCKPKYKG AKRKRSGQQR HRKTKSGTWK MTGGGSEIKR KNSTEVIGDK DYLVFIHDDA 120 ASEKANTKWL MHEIAIADDP LYKENFVVCR LEGRNWDKKL GVSTPDKHQS SQDFASSSSI 180 NVVEDISLES AQPPDRYLVS TTNQVVENIF LKTQLPPSEN LFSCNEDSAT TSLDSGLSPQ 240 NTYTGLQLVP HDVLESLRLP DEQWATYSVD VVENSFEAEP RIPVEFNTHG GFNGLNNDSF 300 LALQSPTYLE QESSYSNGPS FGCDLLNYQI DSGPVIAFSE LQQLPNHLIS CFGNHVAENT 360 YTGLQLVPHH VLESLRLPDE QWATYSVDVV ENSFEAEPRI PAEFNTHGGF NGLNNDSFLA 420 LQSPTYLEQE SSYSNGPSFG CDLLNSQIDS GRVIAFSESQ QLPNHLISCS GNYVAENTST 480 GLQQVPHGIL ESQILSNQYW AAYSTSAIGN SFEAEPQLVA EVNTHGGYNG LNNASLSALQ 540 SPIYPEEE

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MGSLTGIGFR PLDEEIIDLL KKKRLDPGSS VQTIKEIDFY SFDPWELPGL SEIQSTEDVW  60
YFFCKPKYKG AKRKRSGQQR HRKTKSGTWK MTGGGSEIKR KNSTEVIGDK DYLVFIHDDA  120
ASEKANTKWL MHEIAIADDP LYKENFVVCR LEGRNWDKKL GVSTPDKHQS SQDFASSSSI  180
NVVEDISLES AQPPDRYLVS TTNQVVENIF LKTQLPPSEN LFSCNEDSAT TSLDSGLSPQ  240
NTYTGLQLVP HDVLESLRLP DEQWATYSVD VVENSFEAEP RIPVEFNTHG GFNGLNNDSF  300
LALQSPTYLE QESSYSNGPS FGCDLLNYQI DSGPVIAFSE LQQLPNHLIS CFGNHVAENT  360
YTGLQLVPHH VLESLRLPDE QWATYSVDVV ENSFEAEPRI PAEFNTHGGF NGLNNDSFLA  420
LQSPTYLEQE SSYSNGPSFG CDLLNSQIDS GRVIAFSESQ QLPNHLISCS GNYVAENTST  480
GLQQVPHGIL ESQILSNQYW AAYSTSAIGN SFEAEPQLVA EVNTHGGYNG LNNASLSALQ  540
SPIYPEEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	101	KRKRSGQQRHRKTKSGTWKMTGGGSEIKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02230.1	2e-23	NAC family protein