PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY48600.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 575aa MW: 62205.9 Da PI: 9.0224

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY48600.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H GAY48600.1 6 FICEVCNKGFQREQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	13.2	0.00027	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ GAY48600.1 82 WKCEKCSKRYAVQSDWKAHSKTC 104 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKTTK EVKRKVYLCP EPTCVHHDPS 60 RALGDLTGIK KHYSRKHGEK KWKCEKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR 120 DSFITHRAFC DALAQESARH QPSLSAIGSH LYASTNNMAL GLSQVGPQLS SIKDHHQTNQ 180 SGDILCLGGS GSRSTPFDHL LSPSMGSSSS SFRPPQSLAS TPFFMQESNQ NYHEEQQQHQ 240 QGLLPNKPPP FHGLMQFADL QNNPNNSNPV TNSAAAANNL FNLSFLSNSS STNSLSNSNS 300 NNNNNNASNL MLSAAGGHHH HFNNNEQNGT ASTGTGGVDH HQGTNNNLFT NNLISDHQIS 360 SGAVPSLFST SSVHQNETMV PHMSATALLQ KAAQMGSTSS NNNTASLLRS FGGSSSSSGS 420 KPNNNNNNFG GAGNVFGGPG SSENDNSSSI HDLMNPFAAT NSSIFGTGSN DQVNAFSGQD 480 QNHHRRHHHH HPNYEAKLHH NMNAGMGGSD RMTRDFLGVG QIVRSVSGGF QQREKQQQQH 540 GGVIDVSSLD SERNITAPTS QSFGGGGGGG GGSFH

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence

MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKTTK EVKRKVYLCP EPTCVHHDPS  60
RALGDLTGIK KHYSRKHGEK KWKCEKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  120
DSFITHRAFC DALAQESARH QPSLSAIGSH LYASTNNMAL GLSQVGPQLS SIKDHHQTNQ  180
SGDILCLGGS GSRSTPFDHL LSPSMGSSSS SFRPPQSLAS TPFFMQESNQ NYHEEQQQHQ  240
QGLLPNKPPP FHGLMQFADL QNNPNNSNPV TNSAAAANNL FNLSFLSNSS STNSLSNSNS  300
NNNNNNASNL MLSAAGGHHH HFNNNEQNGT ASTGTGGVDH HQGTNNNLFT NNLISDHQIS  360
SGAVPSLFST SSVHQNETMV PHMSATALLQ KAAQMGSTSS NNNTASLLRS FGGSSSSSGS  420
KPNNNNNNFG GAGNVFGGPG SSENDNSSSI HDLMNPFAAT NSSIFGTGSN DQVNAFSGQD  480
QNHHRRHHHH HPNYEAKLHH NMNAGMGGSD RMTRDFLGVG QIVRSVSGGF QQREKQQQQH  540
GGVIDVSSLD SERNITAPTS QSFGGGGGGG GGSFH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-102	C2H2 family protein