PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY48599.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 641aa MW: 69330.9 Da PI: 9.2862

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY48599.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.4e-05	72	94	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H GAY48599.1 72 FICEVCNKGFQREQNLQLHRRGH 94 89*******************88 PP
2	zf-C2H2	13	0.00031	148	170	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ GAY48599.1 148 WKCEKCSKRYAVQSDWKAHSKTC 170 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence
MNMSASSSAP FFEIREDQNQ MKQQHSSTPT SSSAPPPVPP PQKKKRNQPG TPNPDAEVIA 60 LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL KQKTTKEVKR KVYLCPEPTC 120 VHHDPSRALG DLTGIKKHYS RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC GTREYRCDCG 180 TLFSRRDSFI THRAFCDALA QESARHQPSL SAIGSHLYAS TNNMALGLSQ VGPQLSSIKD 240 HHQTNQSGDI LCLGGSGSRS TPFDHLLSPS MGSSSSSFRP PQSLASTPFF MQESNQNYHE 300 EQQQHQQGLL PNKPPPFHGL MQFADLQNNP NNSNPVTNSA AAANNLFNLS FLSNSSSTNS 360 LSNSNSNNNN NNASNLMLSA AGGHHHHFNN NEQNGTASTG TGGVDHHQGT NNNLFTNNLI 420 SDHQISSGAV PSLFSTSSVH QNETMVPHMS ATALLQKAAQ MGSTSSNNNT ASLLRSFGGS 480 SSSSGSKPNN NNNNFGGAGN VFGGPGSSEN DNSSSIHDLM NPFAATNSSI FGTGSNDQVN 540 AFSGQDQNHH RRHHHHHPNY EAKLHHNMNA GMGGSDRMTR DFLGVGQIVR SVSGGFQQRE 600 KQQQQHGGVI DVSSLDSERN ITAPTSQSFG GGGGGGGGSF H

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence

MNMSASSSAP FFEIREDQNQ MKQQHSSTPT SSSAPPPVPP PQKKKRNQPG TPNPDAEVIA  60
LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL KQKTTKEVKR KVYLCPEPTC  120
VHHDPSRALG DLTGIKKHYS RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC GTREYRCDCG  180
TLFSRRDSFI THRAFCDALA QESARHQPSL SAIGSHLYAS TNNMALGLSQ VGPQLSSIKD  240
HHQTNQSGDI LCLGGSGSRS TPFDHLLSPS MGSSSSSFRP PQSLASTPFF MQESNQNYHE  300
EQQQHQQGLL PNKPPPFHGL MQFADLQNNP NNSNPVTNSA AAANNLFNLS FLSNSSSTNS  360
LSNSNSNNNN NNASNLMLSA AGGHHHHFNN NEQNGTASTG TGGVDHHQGT NNNLFTNNLI  420
SDHQISSGAV PSLFSTSSVH QNETMVPHMS ATALLQKAAQ MGSTSSNNNT ASLLRSFGGS  480
SSSSGSKPNN NNNNFGGAGN VFGGPGSSEN DNSSSIHDLM NPFAATNSSI FGTGSNDQVN  540
AFSGQDQNHH RRHHHHHPNY EAKLHHNMNA GMGGSDRMTR DFLGVGQIVR SVSGGFQQRE  600
KQQQQHGGVI DVSSLDSERN ITAPTSQSFG GGGGGGGGSF H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-119	C2H2 family protein